| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1532 |
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| Symbol | |
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| ID | 3762262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1669693 |
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| End bp | 1672842 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637786268 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_391798 |
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| Protein GI | 78485873 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.075861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGAAG AGACTTCACA TAAACGTCGT CAGTCTTTTG CGACCTTTTT TATCAATCGC
CCTGTGTTTG CATGGGTCAT CGCTTTTTTG GTAATGATTG CCGGCGCCAT TTCAGTCGTC
AGCTTACCGA TTGCACAATT CCCAGCCATT GCTCCTCCAT CGATTACGAT CACGGCAACG
TATCCAGGGG CGTCGGCAAA AACCATTGAA GACACCGTCA CTCAAATCAT CGAAACCAAG
ATGAAAGGAT TGGATGGTTT AATGTATATG TCGTCTACCA GCGAATCAAC TGGTCAGGCT
AACATCACCC TAAGCTTCAA GACGGGAACC GATCCAGACA TCGCTCAAAT GCAAATACAA
AATAAGTTGC AAACCGCGAT GTCTTCGCTC CCAGAAGCCG TTCAAAAACA GGGAATTCAA
GTTGTTAAAT CCGTTAAAAA CTTTTTAATG GTAATCGGGT TTATTTCTCC AGACAAAAGT
TTAAATGCGA TTGATTTAGG GGACTATATT GCAACCCATG TCATTGATCA GATCAGCCGT
GTTGACGGCG TCGGTGACGT GGTGCAATTC AGTTCTGAAT ATGCCATGCG CATCTGGGTG
GATCCTTACA AACTGGCTAA ATATAATTTA GTGCCCGCGG ATGTGGTCAA TGCAATCAAA
GCCAATAATG CTGTGGTCAC GGCCGGTCAA TTAGGCGCTG TTCCAGCCGT TGAAAATCAA
CCCATCAATG TCACGGTGAA CTTGCAAAGC CGTTTGAAAA CAACTGACGA GTTTAAAAAT
GTCGTTATTA AAACGGCTCA AGATGGCGCC ACCATTAAAG TTTCAGATGT GGCGCGTGTT
GAAGTCGGAG CGGACACTTA CACCAAACTG GCACGATATA AAGGTGCGCC CGCTGCAGGG
TTTGCCGTTA AACTGGCCTC CAATGCCAAC GCACTGGAAA CCGGTGATCG AGTCATTAAA
CGCATGGAAG AACTGTCTCA GTTTTTCCCA GCAGGTATGG ATTATGTCAA TGCCTACGAT
ACGACGCCGT TTATCAAACT TTCGATTGAA GGGGTGATTC AAACCTTAGT GGAAGCGATT
ATCCTAGTGG TACTCATTAT GTACCTGTTC TTAGGAAATC TGCGTGCCAC ATTAATCCCA
ACCATTACCG TCCCCGTTGT ATTATTGGGA ACCTTCGGCG TTTTGTCCTA TTTTGGCTAT
TCCATCAACA CCTTAACCAT GTTCGCAATG GTACTGGCCA TCGGGCTACT GGTCGATGAT
GCCATCGTGG TGGTCGAAAA CGTTGAACGG GTTATGCATG AAGAGAATCT TCCAGCCAAA
GAAGCAACAC GACGCTCTAT GAACCAAATT TCCGGTGCAT TAATCGGGAT TGGGCTTGTA
CTCAGTGCGG TATTTTTACC AATGGCCTTC TTTCCAGGAT CGGCTGGCGT CATTTACCAG
CAGTTTGCGG TCACCATTGT TTCGGCCATG GTACTGTCGG TGATGGCTGC CTTTATTTTG
ACGCCCGCTC TCTGTGCGAC CATCCTAAAA CCGGTCGACA AAGAAGCGGA ATCGAAAGGT
TTTTTTGGCT GGTTTAACCG TAACTTTGAC CGAGCGTCAA ACGGATACGG AAAAAGTGTT
CGAAGCATCA TTAAACACCG ATTCGCCTTT TTTGGGCTCT ACATCGCCAT TGTGGCGGCG
GTTGGTTTCT TGTATCACAA AACCCCGGCC GGCTTCCTTC CGAATGAAGA CCAAGGCTTT
ATGTTCAGCC AGGTCATGAT GCCTTCAGGC GCAACACGAG AAGACACGTT GGCCGTGGTG
AAAAAACTGG AAAACCACTT CCTGAACACT GAAAAAGACA ATATCGAAGG TCTCTTTACC
GTACTGGGCT TTAACTTCTC TGGAACCGGT CAAAACACAG CGATTGCGTT TGTTCGTCTG
AAAGACTGGT CAGAAAGAAC AGAGCCAAGC CAAAGCGTAC AAGCGATCAT TGGTCGTGCC
ATGGGAACCT TTAGCCAAAT CAAAGAAGCC ATGGTCTTTG CCTTTGGACC ACCTGCTGTT
TTAGAGCTGG GGAACGCCAG CGGCTTTGAC TTATACGTCA AAGACAACAT TGGTATGGGG
CGCGAACAAC TCTATAACGC GCGAAACCAA CTCTTGGGGA TGGCAAGCCA AAACCCTAAT
TTGGTGGCCG TACGGCCCAA TGGTCAAGAG CCCGCCCCTG TACTTGGTAT CACCGTCGAT
AAACAAAAAG CTGAGGCTTT AGGGCTTTCG ATTGCCGACA TTAACCAATC GCTCTCCATT
GCTTGGGGGA GTGCTTATGT CGACGATTTC ATCAAACAAG GCAAGGTGAA AAAGATCTAC
GTTCAATCAG AAGCCGACTA CCGTTCGACG CCAGAAAATT TTAATGACTG GTACGTTCGA
AACAAAGACG GTGACATGAT TCCAGCATCA TCCTTTATCA GCACTTATTG GACAAAAGAA
TCGCCCAAGC TGGAACGTTA CAATGGGCAA CCGGCCTTGG AAGTGTTAGG GATGTCCCCG
CCTTCTGTCA GCTCCGGTCA AGCCATGGAA ACGGTCGAAG CCTTAAGCAA AAAACTGCCT
AAAGGCACCA GCATTGAATG GACTGGGTTG TCTTATGAAG AAAAAGCGGC TGGGGACAAA
GCCTCCTTAC TGTATATCCT ATCGATTTTG GTGGTCTTCT TAGCCTTAGC GGCCTTGTAT
GAAAGTTGGA GCTTACCGAT CTCTGTTATG TTGATTGTGC CGCTCGGGAT TCTTGGAACC
TTGGTTGCCG CCTTCTTGAC CGGTAAACCA AGTGATATTT ACTTCCAGGT AGGTCTGCTC
ACCATTGTGG GGTTAGCCAC CAAAAATGCC ATCCTAATCG TCGAATTCTC CAAAGAACTG
GTGGAAGATG GCATGGATAT CGTTGAAGCA AGTATTCGCG CCGCACGCAT GCGTTTACGC
CCTATCCTAA TGACTTCCTT AGCCTTTGGG TTTGGTGTTT TACCGCTTGC ACTTAGCTCC
GGTGCTGGTT CAGGTGCGCA CAACGCCATC GGAACCGGCG TCTTAGGGGG CATGATCAGT
GCCACCGCAT TGGGTATCTT CTTCGTACCG ATGTTCTTTG TGATTGTTGA GCACTGGTTT
ATTAAAAAAG TAAAATCCAC CGCCTCTTAA
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| Protein sequence | MSEETSHKRR QSFATFFINR PVFAWVIAFL VMIAGAISVV SLPIAQFPAI APPSITITAT
YPGASAKTIE DTVTQIIETK MKGLDGLMYM SSTSESTGQA NITLSFKTGT DPDIAQMQIQ
NKLQTAMSSL PEAVQKQGIQ VVKSVKNFLM VIGFISPDKS LNAIDLGDYI ATHVIDQISR
VDGVGDVVQF SSEYAMRIWV DPYKLAKYNL VPADVVNAIK ANNAVVTAGQ LGAVPAVENQ
PINVTVNLQS RLKTTDEFKN VVIKTAQDGA TIKVSDVARV EVGADTYTKL ARYKGAPAAG
FAVKLASNAN ALETGDRVIK RMEELSQFFP AGMDYVNAYD TTPFIKLSIE GVIQTLVEAI
ILVVLIMYLF LGNLRATLIP TITVPVVLLG TFGVLSYFGY SINTLTMFAM VLAIGLLVDD
AIVVVENVER VMHEENLPAK EATRRSMNQI SGALIGIGLV LSAVFLPMAF FPGSAGVIYQ
QFAVTIVSAM VLSVMAAFIL TPALCATILK PVDKEAESKG FFGWFNRNFD RASNGYGKSV
RSIIKHRFAF FGLYIAIVAA VGFLYHKTPA GFLPNEDQGF MFSQVMMPSG ATREDTLAVV
KKLENHFLNT EKDNIEGLFT VLGFNFSGTG QNTAIAFVRL KDWSERTEPS QSVQAIIGRA
MGTFSQIKEA MVFAFGPPAV LELGNASGFD LYVKDNIGMG REQLYNARNQ LLGMASQNPN
LVAVRPNGQE PAPVLGITVD KQKAEALGLS IADINQSLSI AWGSAYVDDF IKQGKVKKIY
VQSEADYRST PENFNDWYVR NKDGDMIPAS SFISTYWTKE SPKLERYNGQ PALEVLGMSP
PSVSSGQAME TVEALSKKLP KGTSIEWTGL SYEEKAAGDK ASLLYILSIL VVFLALAALY
ESWSLPISVM LIVPLGILGT LVAAFLTGKP SDIYFQVGLL TIVGLATKNA ILIVEFSKEL
VEDGMDIVEA SIRAARMRLR PILMTSLAFG FGVLPLALSS GAGSGAHNAI GTGVLGGMIS
ATALGIFFVP MFFVIVEHWF IKKVKSTAS
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