Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_0500 |
Symbol | |
ID | 3761979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 559161 |
End bp | 560537 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637785211 |
Product | diguanylate cyclase |
Protein accession | YP_390770 |
Protein GI | 78484845 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTCATA TAAGTACGAT AAAAGAAATG GTCAGAATCA GCCCTCTCGA TAAATTAGAG GTCGAGAAAC ATTATTCTTA CTTACTGGAG CAAGAACCTC AATTTGAGCA AAGTGTGGCT CAATGCATTG AGGTTTACCA GTTGCAATCC CTGACACCAG AAACCCTTCT GGCGAATGAT TATTATCGAA ATTTGATTCA TGGTGTGTAC CAGAACAGTT TTTATAATGT TCAGTATCAC CAGACACTCT ATTGGTTAAA AAGTGGGCTC ACCCAAAATC AAATTTTATT GCTGTTAGCG CACATGCGAA TGCAATTTAT TGTGTACGCT GAAGGGTTGA AAAGTGATGC TCTGGCCAGC AGTTTGTGCC ACGTTTTGGA TGTTGGGCAA TCCATTGTCG CCACGATTTT TAACGTGGCC GAATCGATAG AGCGTATGAA AGCACGCTCC AGCCAGGAAA TTCGTCGACT TAAAAATTCT TATCGTTTGG TGGCGTTTGA TTTACCAAAA GATGTTTTGA AAGCTTATAT TGATCATCAA ACCTGGAAAA TTTCAGCTTT TGAGCTCTCA TTAGGGTACG AAACTGATAT TCAAGGGTTT GAAGCTAGCC ATCTAAAATG TCGTTTAGCT AAATGGTTGG ACAATGGTGG GCTAGAGTTG ATTCCAAAAG CCAAACGTCA TAAGTTTTTA AACGATCATG AACAGGTTCA TCGTTTAGGG ACGATGGCGA TTGAAGAGTC GGAGCATAAC CGTCCAGAAA ACATTGTTGA GTTGCTGTTT GAAATGGAAA TAGCTTCTGA AGATGTCATG GAAGTACTGC TTAACTTAAT CGAACAGGAA TTTGTGGCGG CCGCTAATGC GGATTCGCTC ACGGGCTTTC CAAACCGACG TGCGTTTGAT CTGGAATTTG AAAAAGCACT GGCCTTTGCG AAGCGTCATG ATTTTTGGCT GGATTTAGTG GTTGTCGATG TCGACTTCTT TAAAGCCGTT AATGATGAAC ATGGTCATGT GGTCGGCGAT GCCGTTTTGA AGCGAGTGGC TGAAATTTTA GATGACGTAG CGCGCACCGA AGATATGCTG TTCCGTTGGG GTGGCGAAGA GTTCGTGATC ATCACCTTGG ATAAGGATTC AGAAGGCTCG GAAATGCTGG CGGAAAGGAT TCGTAAAGCG GTTGAAGACG AGGTGTTTTT TGCCGGAACC GATCAGGAGA TGCGTTTAAC CGTCAGCTGC GGGGCTTTGA GTTACTGGGC GGGTTTAAGT TTGTCGGAAG AAGAGGTTTT TGAACTGGCG GACAAACAAC TTTATTTGGC GAAAGAAAGT GGCCGTAATC AAGTTTGCCA TCAAGTATAT GATGTGGTTC CGATCCAAAA AGCATAA
|
Protein sequence | MIHISTIKEM VRISPLDKLE VEKHYSYLLE QEPQFEQSVA QCIEVYQLQS LTPETLLAND YYRNLIHGVY QNSFYNVQYH QTLYWLKSGL TQNQILLLLA HMRMQFIVYA EGLKSDALAS SLCHVLDVGQ SIVATIFNVA ESIERMKARS SQEIRRLKNS YRLVAFDLPK DVLKAYIDHQ TWKISAFELS LGYETDIQGF EASHLKCRLA KWLDNGGLEL IPKAKRHKFL NDHEQVHRLG TMAIEESEHN RPENIVELLF EMEIASEDVM EVLLNLIEQE FVAAANADSL TGFPNRRAFD LEFEKALAFA KRHDFWLDLV VVDVDFFKAV NDEHGHVVGD AVLKRVAEIL DDVARTEDML FRWGGEEFVI ITLDKDSEGS EMLAERIRKA VEDEVFFAGT DQEMRLTVSC GALSYWAGLS LSEEEVFELA DKQLYLAKES GRNQVCHQVY DVVPIQKA
|
| |