| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0288 |
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| Symbol | |
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| ID | 3760670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 333651 |
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| End bp | 337709 |
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| Gene Length | 4059 bp |
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| Protein Length | 1352 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637784997 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_390558 |
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| Protein GI | 78484633 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTATT CTTTAACTGA AAAGAAACGT ATTCGTAAAG ATTTTGCGAC ACGATCTTCA
ATTCTTGAAG TTCCTTATCT TCTTTCTCTC CAGAAAGAAT CTTTCAAAGA GTTTTTACAA
AAAGATAAAA AACCACTTGA GCGTGATCCG ATAGGATTGC ATTCAGCATT TTCATCCGTT
TTTCCAATTC ATGGTGTTGC TGGAACAGCA GATCTTGAGT ACGTCAGCTA TACGATGGGT
CAGCCAGAGT TTGACGTTAA GGAATGTAAG CAACGTGGTG TAACGTATTC ATCTCCTTTA
CGTGTCAAGA TGCGTCTGGT TTTGTTTGAT AAGGATGCGC CGGCTGGAAA GCGTCCGGTT
AAGGATGTTA AAGAACAAGA GGTGTATCTA GGCGATGTCC CTTTGATGAC AGAGAATGGT
ACTTTTGTTA TCAACGGAAC TGAGCGTGTT ATTGTGACAC AGCTTCATCG TTCTCCAGGT
GTGATTTTTG ACAGTGATAA AGGGAAGTCG CATTCGTCTG GTAAAGTGTT GTTCAATGCC
CGAATTATTC CTTATCGTGG GTCTTGGTTG GATTTTGAAT TTGATCATAA TGACTGTGTG
TTTGTTCGTA TTGACCGTCG TCGTAAACTC CCAGTCTCGA TTATTTTCAG AGCCATGGGG
TATAGTTCTG AAGAGATTCT AGATACGTTT TTCGATCATA CGCATATTTC ATATAAAAAA
GGTGCATTTG TTATGCAATT GGTTCCAAGC CAATTGAAAG GACAAACGGC TGCGTTTGAT
ATTGCTGACG GCGATAAAGT GATTATTAAG GCCGGCAAGA AAATTACAGC TCGTAATATC
AAACAATTGC AAGAAGCCAA AGTTGATAGC GTTGTTGTTC CAGAAGAGTA TCTTTTAGGG
AAAGTGTTGT CTTCAGGGAT TACGAATGAA GAAACTGGTG AGTTAGTTGC TCGTTCGAAC
GAAGTGATTG CCAGTGACTT GATTGAAACA ATGAAGTCAA TTAAGGATTT GTCTTTCCGT
ATTCTGTTTA TTGACGATTT AGAAAATGGA TCTTATATCT CAGATACGTT GAACTTAGAT
ACAACAACCT CACAGCTTGA AGCTCAAATT GAAATTTATC GTATGATGCG CCCTGGTGAG
CCACCAACGA AAGAATCATC AGAGGCATTG TTTAACAGTT TGTTCTTTGA TGAAGCGCGT
TATGACTTGT CTTCTGTTGG TCGAATGAAG TTGAACAGAC GCTTAGGACG CAAAGACAAT
GAAGGCAGCT TGGTGCTTGA AAACCAGGAT GTTGTAGACG TGGTTAAAGA GTTACTGAAT
ATCCGTAATG GTTTAAGCAC GATTGATGAT ATTGATACAC TAGGTAACAG ACGTATTCGT
GCTGTTGGTG AAATGGCTGA AAATGCTTTC CGAGTAGGTT TAGTTCGCGT AGAAAGAGCC
GTTAAAGAAC GTCTAAATCA AGCGGAAACA GATGGACTGT TGCCACAGGA TTTGATTAAT
GCGAAGCCTG TTTCAGCGGC TATTAAAGAA TTTTTTGGTT CAAGTCAGCT GTCACAGTTT
ATGGATCAGG TGAATCCTTT ATCGGAAGTC ACACATAAGC GACGTGTGTC AGCCTTGGGG
CCAGGCGGTT TGACGCGTGA GCGTGCAGGT TTTGAAGTAC GTGATGTGCA TCCAACGCAT
TATGGTCGTG TGTGCCCAAT TGAAACGCCT GAAGGTCCAA ACATTGGGTT GATTAATACA
TTAGCCATTT ATGCTAAAAC TAATAAATAT GGTTTCTTAG AGACACCGTA TCGAAAAGTT
ATTGATGGTC AGGTGACTGA AGAAGTTGAA TATGTTTCGG CCATTGATGA AGCACAGTTT
GTGATTGCAC AAGCAAGTGC TGCAATGGAT TCAGATAATA AGTTGCTTGA TGAGCTTGTG
ACAGCAAGAC ATAAAAATGA AACTATTTTG GCATCTTCTC AAGATATCGA CTATATGGAT
GTCTCACCAA AACAGATCGT TTCTGTCGCC GCTTCTTTGA TCCCATTCCT TGAGCATGAT
GATGCTAACC GTGCCTTGAT GGGCTCAAAC ATGCAGCGTC AAGCCGTTCC AACATTGCGA
GCGGATAAAC CGTTAGTCGG GACGGGAATT GAAAAAACAG TTGCGATTGA CTCAGGTGTA
ACCGTTATTG CTTTACGTGG TGGAGAAATT GTTTCTTCCG ATTCTGCTCG TATAGTGGTC
CGTGCAAACC AAGAAGAAAT TGCTGAAGGT GAAACTGGGG TTGATATTTA TAACTTGATT
AAATATCAGC GTTCAAACCA GAACACGTGT ATCAACCAGA AGCCGATTGT AAAAGCAGGC
GATGTCGTAT CACGTGGTGA TGTATTGGCA GATGGCCCTT CAACAGATTT AGGTGAGTTG
GCCATTGGTC AAAATATGCG TATCGCGTTT ATGCCATGGA ATGGTTACAA CTTTGAGGAT
TCGATCTTAG TTTCTGAAAG AGTGGTACAA GAAGATCGTT ACACAACAAT TCATATTGAA
GAATTGACTT GTCTTGCTCG TGATACAAAA TTAGGGCCTG AAGAAGTAAC GTCAGATATT
CCAAACGTTG GTGAAGCGGC ACTATCAAGA TTAGATGAAT CTGGGATTGT TTACGTCGGT
GCGGAAGTCA AACAAGGCGA TATCTTAGTT GGAAAAGTCA CGCCAAAAGG TGAGACTCAG
TTAACTCCGG AAGAGAAACT TCTGCGTGCG ATTTTTGGTG AAAAAGCATC GGATGTAAAG
GATACATCAT TACGCGTCAG TAAAGGGGTG GAAGGAACCG TTATTGATGT TCAGGTCTTT
ACGCGCGAAG GTGTTAAGAA AGATGCACGT GCCTTGGCAA TTCAAGAAGA TGAATTGCAA
AAAGTTAGAA AAGACATTGA TGAGCAATAT AAGATTCTTG AAGAAGACAC AATTGATCGT
ATCCAGCCAA TGCTGATTGG TCAAAAATTA GTGGATGGAA CTGAAATTAC AGCAGACTTC
CTAGCTTCTC AAGACTCTAG TAAATGGTTC GGGTTGAATG TTGCTGACGA TGCACTGTCT
TCACATTTAG AGAGCCTGGA AAAGCAACTT GTAGCTAAGA AAGAAGAGCT AAATGGTGTC
TTTGAAGAGA AGAAGAAGAA GTTAACTCAG GGTGATGATC TGCAGCCAGG TGTTTCGAAG
ATGGTTAAGG TTTATGTGGC GGTTAAACGT CGTATTCAAC CGGGTGATAA GATGGCTGGG
CGCCATGGTA ACAAAGGTGT TATTTCACGC ATTTGTCCAG TTGAAGATAT GCCATATGAC
GAGACGGGTC GACCTGTAGA TATCTGTTTG AATCCATTAG GGGTTCCATC TCGTATGAAT
GTTGGACAGA TTCTAGAAAC GCATCTTGGG CTTGCAGCTG AAGGACTTGG TGCAAAAATT
AATGCCATGC TTGAACAGCA AGCCGATATT AAAGAGCTTA AATCTTTCTT GCATAAAATT
TATAACGAAA CTCAAGGTCA AAAAGTAGAC TTTGATTCAT TGACTGATGC AGAAATTATT
GAGTTGGCGG GTAACCTTCG TAAAGGGGTT CCAATGGCTT CACCTGTATT TGATGGTGCA
TCTGAAGATG AGATTAAAGC GTTATTAAGA CTTGCAGACC TTCCTGAGTC GGGTCAAATG
AAACTTTATG ATGGTATCAG CGGGGAAGAG TTTGATCGTC CAGTAACCGT TGGTTATATG
TATTACTTGA AGCTTAATCA CTTGGTTGAT GACAAGATGC ATGCGCGTTC AACGGGCCCT
TACAGCTTGG TTACGCAACA GCCGTTAGGT GGTAAGGCGC AATTTGGTGG TCAGCGATTT
GGTGAGATGG AAGTGTGGGC TCTGGAAGCT TATGGGGCAG CATTTACACT ACAAGAAATG
CTGACAGTTA AGTCAGATGA TTTAAATGGT CGTACACGCA TGTATAAAAA TATTGTCGAT
GGCAATGAAT ACATGGAGCC GGGTATTCCA GAATCATTCA GTGTATTACG TAAAGAAATT
CGTGCCTTGG GTATTGATAT TGAGTTGGAG CAAGAATAA
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| Protein sequence | MTYSLTEKKR IRKDFATRSS ILEVPYLLSL QKESFKEFLQ KDKKPLERDP IGLHSAFSSV
FPIHGVAGTA DLEYVSYTMG QPEFDVKECK QRGVTYSSPL RVKMRLVLFD KDAPAGKRPV
KDVKEQEVYL GDVPLMTENG TFVINGTERV IVTQLHRSPG VIFDSDKGKS HSSGKVLFNA
RIIPYRGSWL DFEFDHNDCV FVRIDRRRKL PVSIIFRAMG YSSEEILDTF FDHTHISYKK
GAFVMQLVPS QLKGQTAAFD IADGDKVIIK AGKKITARNI KQLQEAKVDS VVVPEEYLLG
KVLSSGITNE ETGELVARSN EVIASDLIET MKSIKDLSFR ILFIDDLENG SYISDTLNLD
TTTSQLEAQI EIYRMMRPGE PPTKESSEAL FNSLFFDEAR YDLSSVGRMK LNRRLGRKDN
EGSLVLENQD VVDVVKELLN IRNGLSTIDD IDTLGNRRIR AVGEMAENAF RVGLVRVERA
VKERLNQAET DGLLPQDLIN AKPVSAAIKE FFGSSQLSQF MDQVNPLSEV THKRRVSALG
PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLINT LAIYAKTNKY GFLETPYRKV
IDGQVTEEVE YVSAIDEAQF VIAQASAAMD SDNKLLDELV TARHKNETIL ASSQDIDYMD
VSPKQIVSVA ASLIPFLEHD DANRALMGSN MQRQAVPTLR ADKPLVGTGI EKTVAIDSGV
TVIALRGGEI VSSDSARIVV RANQEEIAEG ETGVDIYNLI KYQRSNQNTC INQKPIVKAG
DVVSRGDVLA DGPSTDLGEL AIGQNMRIAF MPWNGYNFED SILVSERVVQ EDRYTTIHIE
ELTCLARDTK LGPEEVTSDI PNVGEAALSR LDESGIVYVG AEVKQGDILV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVSKGV EGTVIDVQVF TREGVKKDAR ALAIQEDELQ
KVRKDIDEQY KILEEDTIDR IQPMLIGQKL VDGTEITADF LASQDSSKWF GLNVADDALS
SHLESLEKQL VAKKEELNGV FEEKKKKLTQ GDDLQPGVSK MVKVYVAVKR RIQPGDKMAG
RHGNKGVISR ICPVEDMPYD ETGRPVDICL NPLGVPSRMN VGQILETHLG LAAEGLGAKI
NAMLEQQADI KELKSFLHKI YNETQGQKVD FDSLTDAEII ELAGNLRKGV PMASPVFDGA
SEDEIKALLR LADLPESGQM KLYDGISGEE FDRPVTVGYM YYLKLNHLVD DKMHARSTGP
YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAFTLQEM LTVKSDDLNG RTRMYKNIVD
GNEYMEPGIP ESFSVLRKEI RALGIDIELE QE
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