| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0197 |
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| Symbol | |
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| ID | 3762253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 232720 |
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| End bp | 234243 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637784902 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_390467 |
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| Protein GI | 78484542 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACAG GTAATTCTTC TTCATTTCGC TACTTTTCTG CCTTTTTTCT GATCGTTTTT
GGCTTTTTAT TTATGGCCTC TCAATACCCT ATTGCCCCGA TCACGGAAGT CGACATTAAT
TGGAATCTGT ACTTTCAAAT TGCCATTGCT CTGTTCTTTT TATTCGCTTT TATCGGCTAT
AAACGATTCC AAAAACTGAA CCAAGACACC CTAAGACAAG CGGAAGAAGC CAAACAAAAA
CTCCGTACTC TTAAGCGACA ACATGAATTG GAAAAAAAAC GGTTATCGTT TGTTTTAGAC
TGCGGTCGTC TGGCGTATTG GGAATGGGAT ATCAAAAACA ATCAAGCGTA TTTTTCGAAT
TTATGGCAAG ACATGATCGG CTTTACCGAG CATGACTTTC CGCAAGACTT GCATGCCTGG
CAAGCTCGTA TCCACCCACT GGATCAAGAG CAGGTTCAAA AAAAGCTCCT TAAACTTCTG
AGCCACCAAA TAACCGACTA TGAAGACACC CACCGCGTCA TGGACGTCAA CGGAGATTAC
ATTTGGGTGT ATGACCGCGG ACAAACCGTC ACCAATGAGC TGGGCAATGT TGAAAAATTA
AGCTGTGTCC GCTTAAACAT CACTCAACAA AAACAATTGG AAGAAGAGCT GACTTTAGAC
AAAATCTTAC TTGAGAACAC TCAGGAAGCG ATTGCGATTA CCAATGAAAA CTTATCGTTC
ATTCGTACCA ACCCGGCTTT CCACGATGCG TTTGGCTTAA CGCAGTCCGA TTTGGCTAAA
ATGACGCTCA AAGATCTATT GGATAATTTA CAGGACGAAC CACCACAAGA TATTTTAAGC
CAAGTGGACA AAGACCTGGC TTGGCGCGGT GAACTGACGT TGCACCACAC CAACGGGGAG
CTGGCGCGAT CCAGTTTAGT GGATTGCCAA AAAGTCATCC ACCAAACCAC TCAGACAACG
CACTATGCCT TGGTGTACAC CGACATTACC GAATTGAAAC AAACCCAGCA AGAATTGAGT
TTTTTAGCGA ATACAGACAT TGTTACCGGC TTACCGAATC GAAATTACTT TTACCAAGCA
TTAGAAGAAT GGCTGGAAGC CTTTAAGGAT TCTGGCAACA AGTTTACTTT GATGTTTTTA
GACTTGGATA ACTTCAAAAC CGTCAATGAC ACTCTGGGGC ATGATACGGG TGATCATTTG
CTTAAATCAG TGAGTGAACT CATCGCGGAG CATATTGCGG AAGACACTTT ATTTGCCCGC
GTAGGAGGGG ATGAATTTGT GATTTTGTGT CGCGCCTACA CCACACCTGA ACAACTTAAT
GAAATTGGTC AAAACCTTAA TCAACTTCTC AGTCAACCAT TCAACATCGG TGACCATGAA
ATTAAAATTG GTTCCAGTAT TGGGATCGCG CTCTTCCCCG ACCATGGTTC AGACAAAGAA
ACCTTGCTTA AGCACGCCGA TCAGGCGATG TATCAAGCGA AAAATGCCGG AAAAGGCCGT
TATAGAATCT ACCAGGCCTG GTAG
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| Protein sequence | MKTGNSSSFR YFSAFFLIVF GFLFMASQYP IAPITEVDIN WNLYFQIAIA LFFLFAFIGY
KRFQKLNQDT LRQAEEAKQK LRTLKRQHEL EKKRLSFVLD CGRLAYWEWD IKNNQAYFSN
LWQDMIGFTE HDFPQDLHAW QARIHPLDQE QVQKKLLKLL SHQITDYEDT HRVMDVNGDY
IWVYDRGQTV TNELGNVEKL SCVRLNITQQ KQLEEELTLD KILLENTQEA IAITNENLSF
IRTNPAFHDA FGLTQSDLAK MTLKDLLDNL QDEPPQDILS QVDKDLAWRG ELTLHHTNGE
LARSSLVDCQ KVIHQTTQTT HYALVYTDIT ELKQTQQELS FLANTDIVTG LPNRNYFYQA
LEEWLEAFKD SGNKFTLMFL DLDNFKTVND TLGHDTGDHL LKSVSELIAE HIAEDTLFAR
VGGDEFVILC RAYTTPEQLN EIGQNLNQLL SQPFNIGDHE IKIGSSIGIA LFPDHGSDKE
TLLKHADQAM YQAKNAGKGR YRIYQAW
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