Gene Tcr_0184 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0184 
Symbol 
ID3762240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp216569 
End bp217126 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content46% 
IMG OID637784889 
Product2',5' RNA ligase 
Protein accessionYP_390454 
Protein GI78484529 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones54 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAACAT TTGTTGCTGT GCCAGTGAAT GCGGCGCTTC AGAACGTATT GATAAGTCAG 
CTTGCCACCT TACAATCACA ACCGTGGGCT TCAGATGTTG ACTGGACACC GGAAAAGAAT 
TGGCATTTAA CGTTAAAGTT CTTAGGAGAA CTCTCGGCGG AACAAGTGGA AGCCATTGAA 
CGCTCGATGC GAGACTGGTT CGCCGAAGGC ATGAGTTACT TTGAAGCGGA GTTGATTGCG 
ATTAAAGGGT TTCCTCAGGC TCAATCGGGT CCTTTTATTG TCGCGACGCT GGAAGCAACC 
TTACTTTTAC AAGCGTTGGT TCGAGAAATA GAGGAGCAGC TACGTTGCTT CGAGATTCCT 
AAAGATCGAC GAGCGTTTCG ACCGCATATC ACTTTAGGTA AATGGAAAGG AAAGCCAGAC 
GCTTTTCCTG AACTTGAAAT CTCTCTAGAA GCATCCTGGT TGCGAGTGGA CCGGTTGAAT 
TTGTATGAAA GTGTTCAAGT AGAGGGGCGC CATCAATATA AGCCTTTAGC GACCCACGCA 
TTAGAAACGT ATGATTAA
 
Protein sequence
MRTFVAVPVN AALQNVLISQ LATLQSQPWA SDVDWTPEKN WHLTLKFLGE LSAEQVEAIE 
RSMRDWFAEG MSYFEAELIA IKGFPQAQSG PFIVATLEAT LLLQALVREI EEQLRCFEIP 
KDRRAFRPHI TLGKWKGKPD AFPELEISLE ASWLRVDRLN LYESVQVEGR HQYKPLATHA 
LETYD