| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0130 |
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| Symbol | |
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| ID | 3762499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 163542 |
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| End bp | 165566 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637784835 |
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| Product | hypothetical protein |
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| Protein accession | YP_390400 |
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| Protein GI | 78484475 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000346728 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCGT CGTCTCTCCC TTCTCACAAC TCAAAGTTTG AACCAAAGCT TGAACGAGCG
CAGATTGCTT GGTCTGAGGA AGGCGTGCCG ACATCGACAA TGTTTGACGA TGTGTATTAT
TCCAAGCTGG ATGGGTTGGC GGAAGTGAAT TATATTTTCT TGAAGCATAA CCAGCTTCCC
GAGCGATTTG AGACCTTATT ACCCAACAGT CGGTTTTGTA TCCTGGAAAC GGGGTTTGGC
GCCGGGTTGA ACTTCCTGAC AACCTGTTTG CTTTGGCTGG AAAAATCGCC AGCCGATGCG
CAGCTGCATT TTATATCACT CGAAAAATTT CCATTAACCC GATCGGAACT GGCAAAAGCG
CATCATGCAT TTGAGGAAGT AAGCGAGCCG TCAAACGCTT TGTTAGACGT TTATCCGCTT
CATTTACCGG GCTGGCATGA TGTGTTTTTG TATGATCAGC GCATTCGATT AACACTGTGG
TTTGGCCATG TGATGAAAGG GCTGCCTGAA TTTGACGTGC AGGTGGACGC TTGGTTTTTG
GATGGCTTTA CACCGCGTAA GAATCCAGAT ATGTGGCAAT CCGAATTGTA TTTACAGATG
GCCAGGCTAA GCAATGAAGC CACCACTTTT GCCACCTTTA CCGCCGCCGG AGACGTGAGA
AGAGGGCTGG CACAGTATGG TTTTGAGGTT GAAAAAGCAC CGGGTTATGC GCAAAAACGT
GAAATGTGTT TTGGGCGTTA TGCACACTCC CGACCATTTT CTTCCAAAGC CCCTTGGTTC
GAAAGAGCTA AAGGAGGTCA TCCGTCTCCA AAAAAAGCGA TTGTGATTGG TGCCGGACTG
GCCGGGGCGA CGGTGGCTTA CCAGCTTGCC TCGCAAGGGC TTTCTGTGAC CGTTTTGGAA
CAGGAAAAAG CCGTTGCTCA ACAGGCATCC GGTAATTTAG CTGGGGCGAT TCATCCATTG
GTGACAGCGG ATTGGAATGT ACGCAGTCAG TTTTATTTAA AGGGTTTTGA ATGCAGTTTG
CGTTGGTTGC GGCCATGGTT TGACTCTCAC AGCATCGTTG GACAACAAAA TGGATTAATG
CAGTTGGCTA TGACTGAAAC CATGCTTCAA CGGCTGCAAG AAGCCTTAAC GCGAGTGGGG
CTGCCGAAGT CCTTTGCTTA CTGGTGTGAT GCGGATCAGG CCAGCGATTT GATTGGGCAA
AAAACCGATC ATGAAGGACT TTTTTTTCCG GAAGCGGGTT GGGTTCAGCC CACTTCTGTG
GTGACGCAAT GTCTGGCGCA TGAAGCGATT GCGTTAAAGC AAGAAGAAGC GGTGGTTTCC
ATTCAGCCAG TACCGGATCA AAACAGCCAG GACTGGCAGA TTATGACTCC CAATAGTACG
TATCAGGCGG ATGTTGTGGT GGTCGCTACA GGGGCTTTAA ATGGGGATCT GAACGAACAA
CTGAATTTAC CGATTCGTCC AGTGAAAGGA CAGGTGTCGC ACTTTAAAGC CGCGGATTTG
AAAGGGGCGT TAAAGACGAC GGTGACGCAC CGGGGCTATT CGGTTTGCGG TGATTTTGGC
GCACAGTCGC CCTATGCGGC GATTAGCGGC GCTACCTTTG AAGCGCCCGA CCTGTCGCCG
ATTTTGTCTG ATGCGTCTCA TATAGAAAAC CAACGCTTGG CAACGGAAGC CTTACCGAAT
TGGTTAGCGG ATTCCACCGA CATGGCTGGC AAAGTGGGGT TTCGTCCCAC AACACCGGAC
CATTTGCCTT TAATCGGGGC CGTACCGGAC TTTGAATGGA TGAAAACAGC TTATTTTGAG
CAATCTCATA CCCACGCCGT GTATCGTTAT GCCGAACAGC GGTATCAACC CGGGTTGTAC
GTGTCTAATG GACATGGCGC GCGAGGCTTG ATGTCGGTGT TTTTGGCGGC GGAAATGATT
GGTGCGATGG TGACGGGGGA TGCCCAAGTG ATGCCAAAAA GTTTGTATCA CGCGGTGCAT
CCAGCCCGTT TTGCGATACG ACATTGGCGA AGTGGCAAAC GATGA
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| Protein sequence | MAASSLPSHN SKFEPKLERA QIAWSEEGVP TSTMFDDVYY SKLDGLAEVN YIFLKHNQLP
ERFETLLPNS RFCILETGFG AGLNFLTTCL LWLEKSPADA QLHFISLEKF PLTRSELAKA
HHAFEEVSEP SNALLDVYPL HLPGWHDVFL YDQRIRLTLW FGHVMKGLPE FDVQVDAWFL
DGFTPRKNPD MWQSELYLQM ARLSNEATTF ATFTAAGDVR RGLAQYGFEV EKAPGYAQKR
EMCFGRYAHS RPFSSKAPWF ERAKGGHPSP KKAIVIGAGL AGATVAYQLA SQGLSVTVLE
QEKAVAQQAS GNLAGAIHPL VTADWNVRSQ FYLKGFECSL RWLRPWFDSH SIVGQQNGLM
QLAMTETMLQ RLQEALTRVG LPKSFAYWCD ADQASDLIGQ KTDHEGLFFP EAGWVQPTSV
VTQCLAHEAI ALKQEEAVVS IQPVPDQNSQ DWQIMTPNST YQADVVVVAT GALNGDLNEQ
LNLPIRPVKG QVSHFKAADL KGALKTTVTH RGYSVCGDFG AQSPYAAISG ATFEAPDLSP
ILSDASHIEN QRLATEALPN WLADSTDMAG KVGFRPTTPD HLPLIGAVPD FEWMKTAYFE
QSHTHAVYRY AEQRYQPGLY VSNGHGARGL MSVFLAAEMI GAMVTGDAQV MPKSLYHAVH
PARFAIRHWR SGKR
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