| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2319 |
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| Symbol | |
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| ID | 3673447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 2391796 |
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| End bp | 2394867 |
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| Gene Length | 3072 bp |
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| Protein Length | 1023 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637711024 |
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| Product | RND efflux transporter |
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| Protein accession | YP_316077 |
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| Protein GI | 74318337 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium)
[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCTGT CGCGGCGCTT CATCGAGCGG CCGGTCGCCA CGCTCATGCT GGCGCTGGCG
ATGGCCTTGT TCGGCGCGCT CGCCTACACC CAGCTGCCGA TTAACGACCT GCCGCAGGTC
GATTTCCCGA CCTTGCGCGT GAGCGCCGCG TTGCCCGGCG CGAACCCCGA GACGATGGCC
AACACGGTCG CGACGCCGCT CGAACGGCAG CTCGCGACCG TCGCCGGGAT CGAGTCGATG
AGTTCGCAGT CGAGTCAGGG ATCGACCAGC ATCACGCTGC AGTTCGAGCT CGGTCGCGAC
ATCGACGCCG CGGCGCAGGA CGTGCAGACC GCCGTGGCGC AGGCGGCGCG CAATCTGCCC
CAGGGCATGG ACCCGCCACA GCTGCGGAAG ATCAACCCGG CCGATTCACC GATCCTCTAT
CTCGCGCTCT CGTCCGAGCG CCTGCCGCTG ACCGAGCTCG ACGCGCTCGC CGATTCGCGC
GTCGCGCAGC GCCTGTCGAG CCTCTCCGGG GTTGCCCAGG TGCTCGTGTT CGGCTCGCAG
AAATACGCAT TGCGGATCTA CCTCGACCCG GCGAAGCTGC AGGCGCGCGG CCTCACCTTC
GCCGACGTCA TCGAGAAGGT ACAGGCCGCC AACGCCAACC TGCCGGCCGG AACGCTAGAC
GGCGCGTCGC GCGCCTATAC CGTGAAAGCG CCAGTCGCGC TCGCCGATGC GCGCGACTTC
GGCGAAATCA TCGTCGCCTA CCGCGACGGC ACCGCGCTCA GGGTGAAGGA TCTCGGACGC
GCCGAGGACA GCGTCGAGGA CGACAAGCGC CGCACCTGGT ACAACGGCAC GCGCGCGATC
GTCCTCGCCA TCCAGCGCCA GCCCGGCGCG AACACGGTCG AGGTCGTCGA GCGCATCCGC
GCGATGCTGC CGCAGATCGA GGCCGAGCTG CCCGACGGCG TGCGCCTGCA GGTGCATTCC
GACCGTTCGC GCTTCGTCAA GGATTCGCTG CACGAAGTGA ATTTCACGCT CTTGCTCGCG
CTCGTGCTGG TGATCCTCGT CATCTTCGCC TTCCTGCACA ACCTGCGCGC GACGCTGATC
GCCGCGCTGG TGCTGCCGAG CTCGCTGCTC GGCACCTTCG CCTTCATGCA TCTGCTTGGC
TACAGCCTCA ACAACCTCTC GCTGATGGCG ATCACGCTCG CCATCGGTTT CGTCGTCGAC
GACGCCGTCG TCGTGATCGA GAACATCACG CGCCACCTCG ACATGGGCAA GCCGCGCATG
CAGGCCGCGC TCGATGGCGC CCAGGAGATC GGCTTCACGG TGCTGTCGAT GACGATTTCG
CTCGCCGCGG TCTTCCTGCC CATCCTGTTC ATGGGCGGCA TGGTCGGCCG GCTGTTCCAG
GAATTCGCCG TCAGCATCGG CGTCGCCGTG CTGCTCTCGG GCGTCGTCGC GCTGACGCTG
ACGCCGATGC TGTGCGCGCG CGCGCTCGTT CGCGAATCGC CGACGAACCG GCTCTCGCGC
GCGTTCGACG CCGGATTCAC GCGCTTCCAG CGCTTTTACG GCGACAGTCT GCGCGCGTCG
ATGCGCCATC GCGGCGCCAT GCTTCTGTTG TCGCTCGTCC TGCTCGTCGC GATGCTGTGG
CTCGCCGGCC AGGTGAAGCA GGGATTCATT CCGCGCGTCG ACTCGGGAAT GATTTTCGCG
AGCGTGCAGT ATCCGGAAGG CATCCCTTTC GACGAGCTGT CCCGCCGCCA GCAGCAACTC
GCGGCACGCG TGCAGCGGCA CCCGGCCGTC GAGGGCCTGA TGTCGTCGGC CGGGCAGGGC
GGCGGCGGGG TCAGCGGCGG CAACGTCGGC CGCCTCGTGA TCCGCCTCGC GCCGCGCGGG
GACCGGCCGG GCGCCGACGA GGTCATCGAC CAGCTGCGCG CAGAGACGCG CGGTCTCGCC
GGCGTCAACG TGAGCTTCCA GAATCCGGCG TCGATCAACG TCGGCGCGCT CGCGTCGAGC
AGCGATTACC AGCTGACGCT GACCTCGGGC GACTTCGAGG CGCTCAAGGC CGCCGCCAGC
GAGGTCGAGA CACGGCTCGC CAGCGTCGCG CAGATCGACG AGGTCACGAG CAACCTCGAG
TTGCGCAACC CCGAGCTGCG CGTGAACCTC GACCCGGTCG CGGCGGCGCG CCTCGGCGTG
ACCACGCAAC AGGTCCAGCA GGCGCTCTAC GACGCCTTCG GCGGGCGCCG CATCAGCGAA
ATCTACGGCG CCAGCGACCA ATACGTCGTG AGCGTCAAGG CGCTTCCCGA GGCGCAACAG
AATCCAGCCG TCATCGGCGA GTTGCCGCTG AAGACCGCGT CGGGCACGCT GATCCGGCTC
GACGCCGTCG CGACCGTCGA GGCCGGGGTC GGGCCGGTGG CGGTGCATCA CTACGGCCAG
CAGCCCGCCG TCACGCTGTC GTTCGACCTC GCACCGGGCG TCTCGCTCGA CGCCGCCCTG
GCCGCGGCGC ATACGGCCGC CGCCGAAGTT GTCCCGGCCG ACGTCGCGCT GGCGTTCACC
GGGGCGGCGG AAAAATTCCA GGAATCGACC GTGCAACTGC CGCTGCTGCT GCTGTTCACG
GTCGTCGTCA TCTACATGGT GCTCGCGGTG CTGTACGAAC ACCTCGGCCA TCCGCTCACG
ATCCTGACCG CCTTGCCGCT CGCCGGCTTC GGCGCGCTGC TCGTGCTGCT GCTCGCCGAG
CAGGAACTCA ACATCTTCAG CTTCGTCGGC ATCATCCTGC TCGTCGGCCT GGTCAAGAAG
AACGGCATCA TGATGATCGA CTTCGCACTG GCCCGGCAGC GCGCCGGCAT GAGCGCCGAG
GACGCGATCG TCGAGGCGAG CCTCGTGCGC CTGCGGCCGA TCATGATGAC GACCTTCGCC
GCGATCCTCG CCACGCTGCC GATCGCGATC GGCTTCGGCG CGGGCGGCGA GGCGCGCCGC
CCGCTCGGCA TCGCCGTCGT CGGCGGGCTC GCGTTCTCGC AGTTCCTCAC GCTCTACATC
ACGCCGACCT TCTACGTCAG CATGGCCAGC GCCGGCGCCG CGCTGACGCG CTGGCGCGCG
CGCCACGCCT GA
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| Protein sequence | MNLSRRFIER PVATLMLALA MALFGALAYT QLPINDLPQV DFPTLRVSAA LPGANPETMA
NTVATPLERQ LATVAGIESM SSQSSQGSTS ITLQFELGRD IDAAAQDVQT AVAQAARNLP
QGMDPPQLRK INPADSPILY LALSSERLPL TELDALADSR VAQRLSSLSG VAQVLVFGSQ
KYALRIYLDP AKLQARGLTF ADVIEKVQAA NANLPAGTLD GASRAYTVKA PVALADARDF
GEIIVAYRDG TALRVKDLGR AEDSVEDDKR RTWYNGTRAI VLAIQRQPGA NTVEVVERIR
AMLPQIEAEL PDGVRLQVHS DRSRFVKDSL HEVNFTLLLA LVLVILVIFA FLHNLRATLI
AALVLPSSLL GTFAFMHLLG YSLNNLSLMA ITLAIGFVVD DAVVVIENIT RHLDMGKPRM
QAALDGAQEI GFTVLSMTIS LAAVFLPILF MGGMVGRLFQ EFAVSIGVAV LLSGVVALTL
TPMLCARALV RESPTNRLSR AFDAGFTRFQ RFYGDSLRAS MRHRGAMLLL SLVLLVAMLW
LAGQVKQGFI PRVDSGMIFA SVQYPEGIPF DELSRRQQQL AARVQRHPAV EGLMSSAGQG
GGGVSGGNVG RLVIRLAPRG DRPGADEVID QLRAETRGLA GVNVSFQNPA SINVGALASS
SDYQLTLTSG DFEALKAAAS EVETRLASVA QIDEVTSNLE LRNPELRVNL DPVAAARLGV
TTQQVQQALY DAFGGRRISE IYGASDQYVV SVKALPEAQQ NPAVIGELPL KTASGTLIRL
DAVATVEAGV GPVAVHHYGQ QPAVTLSFDL APGVSLDAAL AAAHTAAAEV VPADVALAFT
GAAEKFQEST VQLPLLLLFT VVVIYMVLAV LYEHLGHPLT ILTALPLAGF GALLVLLLAE
QELNIFSFVG IILLVGLVKK NGIMMIDFAL ARQRAGMSAE DAIVEASLVR LRPIMMTTFA
AILATLPIAI GFGAGGEARR PLGIAVVGGL AFSQFLTLYI TPTFYVSMAS AGAALTRWRA
RHA
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