| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2080 |
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| Symbol | secF |
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| ID | 3672252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 2173711 |
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| End bp | 2174643 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637710783 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_315838 |
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| Protein GI | 74318098 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.348624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTGGAAT TATTCCCGTT CAAGAAAACC ATCCCCTTCA TGAGTTGGGG GAAGGCGACG
ACGGCGATTT CGCTCCTGAC TTTCCTGTTC GCGATTTGGG CGCTGTGGGA TAAAGGCCTC
AACCTCGGCG TCGACTTCAC GGGCGGTACC GTGATCGAGA TCACGACGAG TCATGCCGCC
AACCTGCCCG AGATCCGCGG CGCACTCGAG AAGACCGGGC TGCCCGAAAT CTCGGTGCAG
ACCTTCGGCA CCAGCCGCGA CGTCCTGATC CGCCTGCCCA ACAAGGCGCA CATCAACGCA
GCGGAAACGA GCAACCGCGT GCTCGCGGCG GTCAGAACCG TCGACCCAAG TGTGGAGTTG
CGGCGCGTCG ACTTCGTCGG CCCGCAGGTC GGCAAGGAAC TGTACGACAG CGGCGCCCTC
GCCCTGCTCG TCGTCGCCTT CGGCATCATG GCCTATCTGG CGATCCGCTT CGAGTGGCGC
TTCGCCGTCG CGGGCATGCT CGCGAACCTG CACGACATCG TCATCATCCT CGGCGTGTTC
GCGTTCTTCC AGTGGGAATT CACGCTGACC GTGCTCGCCG GCGTGCTCGC GGTCCTCGGC
TACTCGGTCA ACGAATCGGT CGTCGTCTTC GATCGCATCC GCGAGAACAT CCGCAAGATG
CGCGGCGCGA CGATCCCGCA CATCATCGAC GACGCGATCA CCCGCACCAT GAGCCGCACG
ATCATCACCC ACGGCTCGAC GCAGATCATG GTGCTGTCGA TGCTGTTCTT CGGCGGCGAG
GCGCTGCACA ACTTCGCGCT CGCGCTGACG ATCGGCATCA TGTTCGGCAT CTACTCGTCC
GTGCTCGTCG CCAGCCCGCT CCTGCTGATG TTCGGCGTCA AGCGCGAGCA CTTCATCAAG
CCGGTCGAGA AGAAGGAAGA AGCGGTTGTC TAG
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| Protein sequence | MLELFPFKKT IPFMSWGKAT TAISLLTFLF AIWALWDKGL NLGVDFTGGT VIEITTSHAA
NLPEIRGALE KTGLPEISVQ TFGTSRDVLI RLPNKAHINA AETSNRVLAA VRTVDPSVEL
RRVDFVGPQV GKELYDSGAL ALLVVAFGIM AYLAIRFEWR FAVAGMLANL HDIVIILGVF
AFFQWEFTLT VLAGVLAVLG YSVNESVVVF DRIRENIRKM RGATIPHIID DAITRTMSRT
IITHGSTQIM VLSMLFFGGE ALHNFALALT IGIMFGIYSS VLVASPLLLM FGVKREHFIK
PVEKKEEAVV
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