| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1128 |
|---|
| Symbol | |
|---|
| ID | 3673199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 1182353 |
|---|
| End bp | 1185559 |
|---|
| Gene Length | 3207 bp |
|---|
| Protein Length | 1068 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637709811 |
|---|
| Product | carbamoyl-phosphate synthase large subunit |
|---|
| Protein accession | YP_314886 |
|---|
| Protein GI | 74317146 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGCC GCACTGATTT ACAAAGCATC CTCATCATCG GCGCGGGCCC GATCGTCATC
GGGCAGGCCT GCGAGTTCGA CTACTCCGGC GCGCAGGCGT GCAAGGCCCT GCGCGAGGAG
GGCTACAAGG TTATTCTCGT CAACAGCAAC CCGGCGACGA TCATGACCGA CCCGGACATG
GCCGACGTGA CGTACATCGA GCCGATCTCG TGGCAGATCG TCGAGAAGAT CATCGCCAAG
GAGCGCCCCG ACGCGCTGCT GCCGACGATG GGCGGGCAGA CCGCGCTCAA CTGCGCGCTC
GACCTCGCCA AGCACGGCGT GCTCGAGAAA TACGGCGTCG AGATGATCGG CGCGTCCAAG
GACGCGATCG ACAAGGCCGA GGACCGCGAG AAATTCAAGG CCGCGATGAC CAAGCTCGGG
CTCGGCTCGG CGCGCTCGGC GATCGCCCAC AGCATGGAAG AGGCGCTGCA GGTGCAGGCC
GCGCTCGGCT TCCCGACCAT CATTCGGCCG TCGTTCACGA TGGGCGGCTC GGGCGGCGGC
ATCGCCTACA ACAAGGACGA ATTCGTCGCC ATCTGCGAGC GCGGGCTGGA AGCCTCGCCG
ACGCACGAAC TGCTGATCGA GGAATCGCTG CTCGGCTGGA AAGAGTACGA GATGGAGGTC
GTGCGCGACA GCAAGGACAA CTGCATCATC GTCTGCTCGA TCGAGAACTT CGATCCGATG
GGCGTGCACA CCGGCGATTC GATCACCGTC GCCCCGGCGC AGACGCTGAC CGACAAGGAA
TATCAGATCA TGCGCAACGC GAGTCTCGCG GTGTTGCGCG AGATCGGCGT CGACACGGGC
GGCTCGAACG TCCAGTTCGC GATCAACCCC GACGACGGGC GGATGGTCGT CATCGAGATG
AACCCGCGCG TCTCGCGCTC GAGCGCGCTC GCGTCGAAGG CGACCGGCTT CCCGATTGCC
AAGGTCGCGG CCAAGCTCGC GGTCGGCTAC ACGCTCGACG AACTGCAGAA CGACATCACG
GGCGGCGCGA CCCCGGCCTC GTTCGAGCCG TCGATCGACT ACGTCGTGAC CAAGGTGCCG
CGCTTCGCGT TCGAGAAATT CCCGCAGGCC GACGACCGCC TGACCACGCA GATGAAATCG
GTCGGCGAAG TCATGGCGAT GGGGCGAACC TTCCAGGAAT CGCTACAGAA AGCCCTGCGC
GGACTCGAGG TCGGCGCCGA TGGCCTCGAT CCGAAGACGA CCGATCGCGA GGAGATCGAG
GCCGAACTGA TGTCGCCCGG ACCCGAGCGC ATCTGGTACG TCGGCGACGC TTTCCGCGTC
GGCATGACGC TCGACGAGGT CCACGCGGTG TCGAAGATCG ACCCGTGGTT CCTCGACCAG
ATCGAGGTGC TGATCGAACT CGAAGCCTCG CTCGCGGGCC GCGCACTGGT CGACCTCGGG
CGCGACGAAC TGCGCGACCT GAAGCGCGCC GGCTTTTCCG ACCGGCGTCT CGCCAAACTC
CTGAACACCG ACCAGCACGC GGTGCGCGCC CGGCGTAACG AGCTGGCGCT GCACCCGGTC
TACAAGCGCG TCGACACCTG CGCGGCCGAA TTCGCGACGC AGACCGCGTA CATGTATTCG
ACCTACGAGG AAGAGTGCGA GGCGCATCCG AGCGACAAGA AGAAGATCAT GGTTCTCGGC
GGCGGCCCCA ACCGCATCGG TCAGGGCATC GAGTTCGATT ACTGCTGCGT GCATGCCGCG
CTCGCGCTAC GCGAGAACGG GTTCGAGACC ATCATGGTCA ACTGCAACCC GGAGACCGTC
TCGACCGACT ACGACACGTC CGATCGCCTT TATTTCGAGC CGCTGACGCT CGAGGACGTG
CTCGAAATCG TGCGCATCGA GAAACCCTTC GGCGTCATCG TGCAGTACGG CGGCCAGACG
CCGCTCAAGC TCGCGCGCGA CCTGGAACGC AACGGCGTGC CCATCATCGG CACCAGCCCC
GATATGATCG ACGCCGCCGA GGACCGCGAG CGCTTCCAGC AGATGCTGCA CGACCTCGGC
CTCAAGCAGC CGCCCAACCG TACCGCGCGC GACCCCGAGA GCGCGCTGCG CATGGCCGCC
GAGATCGGCT ATCCGCTCGT CGTGCGCCCG TCCTACGTGC TCGGCGGCCG CGCCATGGAA
ATCGTGCGCG AGGAGGCCGA CCTCGTCCGC TACATGACGG AAGCGGTCAA GGTGTCGAAC
AAGTCGCCGG TGCTGCTCGA CCGCTTCCTC AACGACGCGA TCGAGGTCGA CGTCGACGCG
CTCTCCGACG GCGAGCAGGT CGTGATCGGC GGCATCATGC AGCACATCGA GCAGGCCGGC
GTGCACTCCG GCGATTCGGC GTGCTCGCTG CCGCCGTACA GCCTCGCGGA CGCGTTGCAG
GACGAGCTGC GCCGGCAGAC CGTCGCGATG GCGAAGGCGC TGAAAGTCGT CGGCCTGATG
AACGTGCAGT TCGCGATCCA GGGCGATACG GTCTACGTGC TCGAAGTGAA TCCGCGCGCC
TCGCGTACCG TGCCTTATGT GTCGAAAGCG ATCGGCGCGC CGCTGGCGAA GATCGCGGCG
CGGGCGATGG CCGGCATTTC GCTGAAGTCG CAGGCTTTCG AGAAAGAGGT CATTCCGCCG
TATTTCTCCG TCAAGGAAGC CGTCTTCCCA TTCCGTAAAT TCCCCGGAGT CGACACGATT
CTCGGCCCCG AAATGAAGTC GACCGGCGAG GTCATGGGGG TTGGCGACAA TTTCGGCGAG
GCCTTCGTCA AGTCGCAACT GGCGTCGAGT TCGGAGCTGC CGAAACCGGG CGGGCGCGCC
TTCATCAGCG TGCGTTCGGG AGATCACAGC GCCGTGGTCG ATCTGGCGCA AGGGCTGCGC
GACCTCGGCT TCAGCCTCGT CGCGACGCGG GGGACGGCAC AGGTCATCGA GGCCGCGGGG
ATTCCGGTCG CGATCGTCAA CAAGGTCAAG GAAGGCCGGC CGCACATCGT CGACATGATC
AAGAACGGCG ACATCGATTT CATTGTCAAT GTCGTCGAAG ACAAGAAGGC GGTGAAGGAT
TCGTACGCGA TTCGCGCCGA GGCGCTCTCG CGCAGGGTCG TATACTTCAC CACGCTTGCC
GGCGCGCGCG CGGCCTGCAT GGGCATGCAG CACGGCAACG AACTCGAGGT GTATTCTTTG
CAGGCGCTGC ACCGGCGTCT GAACTGA
|
|---|
| Protein sequence | MPSRTDLQSI LIIGAGPIVI GQACEFDYSG AQACKALREE GYKVILVNSN PATIMTDPDM
ADVTYIEPIS WQIVEKIIAK ERPDALLPTM GGQTALNCAL DLAKHGVLEK YGVEMIGASK
DAIDKAEDRE KFKAAMTKLG LGSARSAIAH SMEEALQVQA ALGFPTIIRP SFTMGGSGGG
IAYNKDEFVA ICERGLEASP THELLIEESL LGWKEYEMEV VRDSKDNCII VCSIENFDPM
GVHTGDSITV APAQTLTDKE YQIMRNASLA VLREIGVDTG GSNVQFAINP DDGRMVVIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDELQNDIT GGATPASFEP SIDYVVTKVP
RFAFEKFPQA DDRLTTQMKS VGEVMAMGRT FQESLQKALR GLEVGADGLD PKTTDREEIE
AELMSPGPER IWYVGDAFRV GMTLDEVHAV SKIDPWFLDQ IEVLIELEAS LAGRALVDLG
RDELRDLKRA GFSDRRLAKL LNTDQHAVRA RRNELALHPV YKRVDTCAAE FATQTAYMYS
TYEEECEAHP SDKKKIMVLG GGPNRIGQGI EFDYCCVHAA LALRENGFET IMVNCNPETV
STDYDTSDRL YFEPLTLEDV LEIVRIEKPF GVIVQYGGQT PLKLARDLER NGVPIIGTSP
DMIDAAEDRE RFQQMLHDLG LKQPPNRTAR DPESALRMAA EIGYPLVVRP SYVLGGRAME
IVREEADLVR YMTEAVKVSN KSPVLLDRFL NDAIEVDVDA LSDGEQVVIG GIMQHIEQAG
VHSGDSACSL PPYSLADALQ DELRRQTVAM AKALKVVGLM NVQFAIQGDT VYVLEVNPRA
SRTVPYVSKA IGAPLAKIAA RAMAGISLKS QAFEKEVIPP YFSVKEAVFP FRKFPGVDTI
LGPEMKSTGE VMGVGDNFGE AFVKSQLASS SELPKPGGRA FISVRSGDHS AVVDLAQGLR
DLGFSLVATR GTAQVIEAAG IPVAIVNKVK EGRPHIVDMI KNGDIDFIVN VVEDKKAVKD
SYAIRAEALS RRVVYFTTLA GARAACMGMQ HGNELEVYSL QALHRRLN
|
|---|
| |