| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0970 |
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| Symbol | rumA |
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| ID | 3672764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1033581 |
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| End bp | 1034879 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637709651 |
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| Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
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| Protein accession | YP_314728 |
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| Protein GI | 74316988 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGG TCGTCGACAT CCTTTCCCTC GATCACGAGG GCCACGGCGT CGCACGCCTC
GACGGCAAGG TCACCTTCGT CGACGGCGCG CTGGCCGGCG AGCGCGCGGA AATCGCGATC
TTTCGCAAGC ACGCCAAGTA CAACTCGGCC AATGCGGTCG CGATTCTCGC GCCCAGCGCG
CAGCGCGCAG AACCGCGTTG CCGCTATTTC GGCCGCTGCG GCGGCTGCTC GATGCAGCAT
CTCGAGCCGA GCGCCCAGGT CGCGGCCAAG CAACGCGTGC TCGAGGAAAA CCTCGCCCGC
ATCGGCAAGG TCCGCCCCAG TGTCCTGCTG CCGGCGCTGC ACGGCCCGAG CTGGGGCTAC
CGCGGCCGCG CGCGCCTCTC GGTGCGCCGC GTCGAGAAGA AAGGCGGCGT GCTGGTGGGC
TTTCACGAGA AGCGCTCGAG CTTCATCGCC GACATGGCCA GCTGCGAGGT GCTCGCCCCC
GGCGTGTCGG CCCTGATCCA GCCGCTGCGC GAGCTGATCG GCCGCCTGTC GAACGCCGAC
CGCATCCCGC AGATCGAAGT CGCCGCCGGC GAACACGTCA TCGTGCTGGT GTTCCGCCTG
CTCGAACCCT GGAACGACGA CGATGCGGCG CACGTTCGCG CATTCGCCGA CGCGCACCAC
GTGCAGGTCT GGGAGCAGCG CAAGGGTCCG GAGACCGCGC GCCCGTTCTG GCCCGACATC
GCGCCGGAAT TGAGCTACGG CCTGCCCGAA TTCGGGCTGG TAATGCCTTT CCGGCCGACC
GAGTTCACCC AAGTCAACAG TGCGATCAAC CGCGCGCTCG TGAGCCGCGC GCTGCGCCTG
CTCGACCCGC GGCCAGGCGA ACGCATCGCC GACCTGTTCT GCGGCCTCGG CAACTTCACG
CTGCCGATCG CGCACCGCGG CGCCGACGTC CTCGGCATCG AGGGCAGCAC GGAGCTCGTC
GCCCGGGCGC GCGAAAACGC CCTGCGCAAC GCCCTGCCCC ACGCGCGATT CGAGGTCGAC
AACCTGTTCG AGATGACGCC GGAAAAATTC GCCGCGCTCG GGCCCTTCGA CAAGCTGTTG
ATCGACCCCC CGCGCTCGGG CGCGATCGAG GTCGTGAAGT CGCTGCCGGA GGCCGGCGCG
CCCCGCCGCA TCGTCTACGT TTCCTGCGAT CCAGCGACGC TCGCACGCGA TGCCGAGGTG
CTCGTCCACG TCAAGGGCTA CCGGCTGGAA GCGGCCGGCG TCGCCAACAT GTTCCCTCAC
ACCGCGCACG TCGAATCGAT CGCGCTATTC GAGCGCTAA
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| Protein sequence | MNPVVDILSL DHEGHGVARL DGKVTFVDGA LAGERAEIAI FRKHAKYNSA NAVAILAPSA
QRAEPRCRYF GRCGGCSMQH LEPSAQVAAK QRVLEENLAR IGKVRPSVLL PALHGPSWGY
RGRARLSVRR VEKKGGVLVG FHEKRSSFIA DMASCEVLAP GVSALIQPLR ELIGRLSNAD
RIPQIEVAAG EHVIVLVFRL LEPWNDDDAA HVRAFADAHH VQVWEQRKGP ETARPFWPDI
APELSYGLPE FGLVMPFRPT EFTQVNSAIN RALVSRALRL LDPRPGERIA DLFCGLGNFT
LPIAHRGADV LGIEGSTELV ARARENALRN ALPHARFEVD NLFEMTPEKF AALGPFDKLL
IDPPRSGAIE VVKSLPEAGA PRRIVYVSCD PATLARDAEV LVHVKGYRLE AAGVANMFPH
TAHVESIALF ER
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