| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0335 |
|---|
| Symbol | |
|---|
| ID | 3672121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 355177 |
|---|
| End bp | 356073 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637708996 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_314093 |
|---|
| Protein GI | 74316353 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0243688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTCCT TGATGATCCA GGGCGCCGCG TGTCGCTGCC AGCAGTTCCT CGCCCTGTGC
AAGCTGCGTG TGGTGAGCCT GATCGTGTTC ACGGCCGTGA TCGGGATGTT TCTGGCGGTG
CCGGCCTGGC CGAGTTGGAC CACGATCTGG GCCGGGACTC TCGGAATCGG GCTCGTCGCG
AGCGCCGCGG CCGCGTTCAA CTGCCTGATC GAGCAGAAAA TCGACGCCGT CATGGCGCGC
ACCCGCGCGC GCCCGTTGCC GCGAGGCGAA CTGACCGGCA CACAGACGCT CGTGTTCGCC
GGCGTGCTCG GCGGAAGCGG TCTGCTTCTG CTCCATACCG TCGTCAATCC GCTCACGATG
TGGCTGACGC TCGCGACCTT CGTCGGCTAC GCGGTGATCT ATACGGTTCT TCTCAAGCCC
GCGACGCCGC AGAACATCGT CATCGGAGGC GCCTCGGGCG CGATGCCGCC GGTGCTCGGC
TGGGCTGCGG CGACCGGGGA GATTCACCAC GACGCCTTGC TGCTCTTTCT CATCATCTTC
GCCTGGACGC CGCCGCATTT CTGGGCGCTG GCGCTGTATC GGCGCGAGGA ATACGCGAGG
GCCGGACTGC CGATGCTCCC GGTCACGCAC GGCGAGGCCT ATACGCGCCT GCATGTCCTG
CTCTACACGC TGCTGCTGCT CGCCGTGAGT CTGCTGCCGG TCGGCACCGG GATGGCCGGC
GCCCTCTACC TCGTCGGCGC GGTCCTGCTG GGAGCGCGTT TCATCCAGTA CGGCTGGGCG
CTCCACCGCG AATACAGTGA CGCGCTGGCG CGCCGGACCT TCCGGTATTC GATCTGGTAT
CTTGCCGCCT TGTTCGCGAT CATGTTGCTC GACCACTATT TCCCGATACC GGTATGA
|
|---|
| Protein sequence | MESLMIQGAA CRCQQFLALC KLRVVSLIVF TAVIGMFLAV PAWPSWTTIW AGTLGIGLVA
SAAAAFNCLI EQKIDAVMAR TRARPLPRGE LTGTQTLVFA GVLGGSGLLL LHTVVNPLTM
WLTLATFVGY AVIYTVLLKP ATPQNIVIGG ASGAMPPVLG WAAATGEIHH DALLLFLIIF
AWTPPHFWAL ALYRREEYAR AGLPMLPVTH GEAYTRLHVL LYTLLLLAVS LLPVGTGMAG
ALYLVGAVLL GARFIQYGWA LHREYSDALA RRTFRYSIWY LAALFAIMLL DHYFPIPV
|
|---|
| |