Gene TRQ2_1054 details

Gene Information

• Locus tag: TRQ2_1054
• ID: 6092486
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga sp. RQ2
• Kingdom: Bacteria
• Replicon accession: NC_010483
• Strand: -
• Start bp: 1098930
• End bp: 1100756
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 642488249
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001739084
• Protein GI: 170288846
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTCTGG ACGAGATCAA GAGAATGAGC TACGATGAGC TGAAAAGACT GGCAGAAGAC 
ATCCGAAAGA AGATCACAGA AGTTGTCTTG AAGAACGGGG GACACCTCGC ATCGAATCTC 
GGAACAATAG AATTGACCCT CGCCCTCTAC AGGGTCTTCG ACCCGAGGGA AGATGCTATT 
ATCTGGGACA CTGGCCACCA GGCTTACACA CACAAAATTC TCACCGGTCG CGATGAACTG 
TTTCACACGA TAAGAACCTT CGGCGGTCTC AGTGGTTTTG TGACGAGAAG AGAATCTCCA 
CTCGACTGGT TTGGAACGGG CCACGCCGGA ACCTCCATAG CCGCGGGCCT TGGTTTCGAA 
AAAGCATTCG AGCTGCTCGG AGAGAAAAGG CACGTTGTGG TCGTCATCGG TGATGGTGCA 
CTCACCTCCG GCATGGCACT CGAGGCACTG AACCAGCTGA AGAATATCAA CTCGAAGATG 
AAGATCATAC TGAACGACAA CGGCATGTCC ATCTCGCCAA ACGTAGGTGG GCTCGCCTAT 
CACCTCTCAA AATTGAGAAC CAGTCCAATC TACCTGAAAG GAAAAAAAGT CCTGAAGAAA 
GTTCTCGAAA AAACAGAGAT CGGGTTCGAA GTCGAAGAAG AAATGAAGTA TCTGAGAGAC 
AGTCTCAAAG GAATGATACA GGGAACCAAC TTCTTTGAAT CCCTCGGTTT GAAATATTTT 
GGTCCTTTCG ACGGTCACAA CATAGAGTTA CTGGAGAAAG TTTTCAAGCG GATCAGAGAC 
TACGATTATT CATCGGTCGT CCACGTGGTA ACCAAAAAAG GAAAAGGGTT CACCGCCGCG 
GAAAAAGATC CCACGAAGTA CCACAGCGCT TCACCATCTG GAAAACCGAA AATGCTCTCC 
TACAGCGATC TGCTGGGACA CACCCTCTCA GGAATAGCGA GAGAAGACAA GAAAATCGTC 
GCCATAACGG CTGCGATGGC CGACGGAACA GGACTTTCCA TATTCCAGAG AGAACATCCC 
GATCGCTTCT TCGATCTTGG AATAACAGAG CAGACCTGCG TAACCTTTGG AGCCGCTCTC 
GGTCTTCACG GAATGAAGCC TGTGGTCGCC ATATACTCCA CCTTCCTGCA GAGAGCGTAC 
GATCAGATCA TTCACGATGT GGCTTTGCAG AACGCTCCCG TTCTCTTTGC GATCGACAGA 
TCCGGTGTGG TGGGAGAAGA CGGTCCCACA CACCACGGCT TGTTCGACAT GAATTACCTG 
CTTTCAGTCC CGAACATGAA GATCATTTCT CCGTCTTCTC CTGAGGAGTT CGTGAGTTCA 
CTGTACACCG TTCTAAAGCA CCTCGATGGT CCCGTTGCCA TTCGCTATCC CAAAGAGTCC 
TTCTACGGTG AAGTCGAATT CTTCTTGGAG AACATGAAAG AGATCGACCT TGGCTGGAAG 
ATATTGAAGA GAGGAAGGGA AGCCGCGATA ATAGCGACCG GCACCATTTT GAACGAAGTT 
TTGAAGATAC CTCTCGATGT GACTGTGGTG AACGCTCTCA CGGTGAAACC GCTGGACACG 
ACCGTTTTAA AAGAAATCGC CAGGGAACAC GATCTCATTA TCACCGTTGA AGAAGCCATG 
AAAATCGGTG GTTTTGGATC CTTCGTTGCT CAGAGACTTC AAGAAATGGG ATGGCAGGGA 
AAGATCGTTA ATTTAGGTGT CGAAGATATC TTCGTTCCCC ATGGGAGTAG AAAGGAACTT 
CTCAGCATGC TGGGGCTGGA TTCGGAGGGA CTCACAAAAA CTGTGCTAAC ATATATTAAG 
GCCAGAAGTA GGGAGGGGAA AGTATGA 

 

Protein sequence

MLLDEIKRMS YDELKRLAED IRKKITEVVL KNGGHLASNL GTIELTLALY RVFDPREDAI 
IWDTGHQAYT HKILTGRDEL FHTIRTFGGL SGFVTRRESP LDWFGTGHAG TSIAAGLGFE 
KAFELLGEKR HVVVVIGDGA LTSGMALEAL NQLKNINSKM KIILNDNGMS ISPNVGGLAY 
HLSKLRTSPI YLKGKKVLKK VLEKTEIGFE VEEEMKYLRD SLKGMIQGTN FFESLGLKYF 
GPFDGHNIEL LEKVFKRIRD YDYSSVVHVV TKKGKGFTAA EKDPTKYHSA SPSGKPKMLS 
YSDLLGHTLS GIAREDKKIV AITAAMADGT GLSIFQREHP DRFFDLGITE QTCVTFGAAL 
GLHGMKPVVA IYSTFLQRAY DQIIHDVALQ NAPVLFAIDR SGVVGEDGPT HHGLFDMNYL 
LSVPNMKIIS PSSPEEFVSS LYTVLKHLDG PVAIRYPKES FYGEVEFFLE NMKEIDLGWK 
ILKRGREAAI IATGTILNEV LKIPLDVTVV NALTVKPLDT TVLKEIAREH DLIITVEEAM 
KIGGFGSFVA QRLQEMGWQG KIVNLGVEDI FVPHGSRKEL LSMLGLDSEG LTKTVLTYIK 
ARSREGKV