Gene TRQ2_0429 details

Gene Information

• Locus tag: TRQ2_0429
• ID: 6091834
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga sp. RQ2
• Kingdom: Bacteria
• Replicon accession: NC_010483
• Strand: +
• Start bp: 417415
• End bp: 419214
• Gene Length: 1800 bp
• Protein Length: 599 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 642487607
• Product: recombination factor protein RarA/unknown domain fusion protein
• Protein accession: YP_001738468
• Protein GI: 170288230
• COG category: [L] Replication, recombination and repair; [R] General function prediction only
• COG ID: [COG2110] Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000753896
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGTATTT CAGAAAAACC CTTGAATGAA CTGCTCAGGC CGAAAGATTT CGAGGATTTC 
GTCGGTCAGG ATCATATATT CGGCGATAAA GGGATTCTCC GGCGAACTTT AAAAACAGGC 
AACATGTTCT CCTCCATCCT TTATGGACCA CCGGGGTCTG GTAAGACCTC GGTTTTTTCA 
CTGCTGAAAA GGTATTTCAA CGGCGAGGTA GTTTATCTGA GCTCCACCGT TCACGGGGTT 
TCTGAAATAA AGAACGTTCT CAAAAGAGGA GAACAGCTGA GAAAATACGG AAAAAAACTG 
CTTCTTTTTC TCGATGAAAT ACACCGCCTG AACAAAAACC AGCAGATGGT CTTGGTTTCC 
CATGTTGAAC GAGGAGACAT CGTACTGGTT GCGACAACAA CTGAAAACCC AAGTTTTGCC 
ATCGTACCCG CACTTCTCTC AAGATGCAGG ATTCTTTACT TCAAAAAACT CTCTGACGAG 
GACCTGATGA AGATCTTGAA AAAAGCAACA GAGGTTCTCA ACATCGATCT GGAAGAAACG 
GTAGAGAAAG CCATAGTAAG GTATTCCGAA GGAGACGCCA GGAAACTCTT GAACACCCTG 
GAGATCGTCC ACCAGGCGTT CAAAAACAAG AGGGCAACTC TTGAAGATCT GGAAACTCTG 
CTGGGAAATG TGAGCGGGTA CACGAAGGAA TCACACTACG ATTTCGCTTC AGCCTTTATA 
AAGAGTATGA GGGGTAGCGA TCCAAACGCC GCCGTTTACT ACCTCGTCAA GATGATAGAG 
ATGGGAGAAG ACCCGCGATT CATAGCACGA AGAATGATCA TATTCGCCAG CGAAGACGTT 
GGACTCGCCG ACCCAAACGC TCTACATATC GCCGTTTCGA CCTCCATCGC TGTCGAACAC 
GTGGGACTTC CCGAATGCTT GATGAACCTT GTAGAGTGTG CCATCTACCT TTCCCTCGCT 
CCCAAGAGCA ATTCTGTTTA TCTTGCAATG AAAAAGGCCC AGGAACTTCT TGTGGAGGAC 
GTACCGCTTT TTTTGAGAAA TCCCGTCACC GAAGAAATGA AAAAGCGTGG ATACGGGGAA 
GGGTATCTTT ATCCTCATGA TTTCGGCGGC TTTGTGAAAA CGAACTATCT TCCAGAAAAG 
TTGAAAGGTG AGGTCATCTT CCAGCCAAAA AGAGTAGGTT TTGAGGAAGA ACTCTTTGAA 
AGGCTCAAAC GTCTTTGGCC CGAGAAGTAC GGGGGTGAAA GTATGGCCGA AGTGAGAAAA 
GAACTGGAAT ACAAAGGGAA AAAGATCAGA ATCGTAAAGG GAGACATCAC AAGAGAAGAA 
GCGGACGCCA TAGTGAACGC GGCGAACGAA TATCTGAAAC ACGGAGGAGG AGTAGCGGGA 
GCGATCGTGA GAGCAGGTGG AAGCGTTATT CAGGAGGAAA GCGACAGGAT CGTTCAGGAG 
CGTGGAAGAA TTCCGACAGG CGAAGCGGTG GTAACCGGCG CTGGAAAGCT GAAGGCAAAA 
TACATGATTC ACGCTGTGGG ACCCGTTTGG AGAGGAGGCA GTCATGGAGA GGACGAACTC 
CTCTACAAAG CAGTTTACAA CGCACTCCTT CGAGCTCACG AACTGAAATT GAAAAGCATC 
TCAATGCCTG CCATCAGCAC AGGAATCTTC GGATTTCCGA AAGAAAGAGC GGTGGGAATC 
TTTTCAAAGG CAATAAAAGA TTTCATCGAT CAACATCCGG ATACCGCTCT GGAAGAAATC 
CGCATATGCA ATATAGACGA GGAAACAACG AAAATTTTCG AAGAAAAGTT CAGCGTTTGA 

 

Protein sequence

MSISEKPLNE LLRPKDFEDF VGQDHIFGDK GILRRTLKTG NMFSSILYGP PGSGKTSVFS 
LLKRYFNGEV VYLSSTVHGV SEIKNVLKRG EQLRKYGKKL LLFLDEIHRL NKNQQMVLVS 
HVERGDIVLV ATTTENPSFA IVPALLSRCR ILYFKKLSDE DLMKILKKAT EVLNIDLEET 
VEKAIVRYSE GDARKLLNTL EIVHQAFKNK RATLEDLETL LGNVSGYTKE SHYDFASAFI 
KSMRGSDPNA AVYYLVKMIE MGEDPRFIAR RMIIFASEDV GLADPNALHI AVSTSIAVEH 
VGLPECLMNL VECAIYLSLA PKSNSVYLAM KKAQELLVED VPLFLRNPVT EEMKKRGYGE 
GYLYPHDFGG FVKTNYLPEK LKGEVIFQPK RVGFEEELFE RLKRLWPEKY GGESMAEVRK 
ELEYKGKKIR IVKGDITREE ADAIVNAANE YLKHGGGVAG AIVRAGGSVI QEESDRIVQE 
RGRIPTGEAV VTGAGKLKAK YMIHAVGPVW RGGSHGEDEL LYKAVYNALL RAHELKLKSI 
SMPAISTGIF GFPKERAVGI FSKAIKDFID QHPDTALEEI RICNIDEETT KIFEEKFSV