| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3829 |
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| Symbol | |
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| ID | 4074980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | + |
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| Start bp | 74574 |
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| End bp | 75452 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004488 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_611223 |
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| Protein GI | 99077964 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.13066 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAC TTCCCCCGCT CAACAGTTTG CGTGCTTTTG ATGCAGCAGG CCGCCGCCTC
AGTTTCCGTG CAGCCGCTGA TGAGTTGGGT GTCACGCAAG GGGCCGTTGC GCAGCAGGTG
CGACAACTCG AAGCGCATTT TGATGTGGTC TTGTTTGAAC GGGTGCCGAA GGGCCTGGCT
TTTACGCCAG TCGGGCGCAG CTATCACAAC CGGATTGCCG GAGTGTTCGC AGACCTTCGA
GCCGCAACTG CCGAGTTGAA GCCAGAGCCG AATAAAGTTC TCATCAGTGT CACGCCAACC
TTTGCTGCGA AATGGCTGAT TCCCAATCTT CCCGACTTCG CTACAGCACA TCCGAACATC
GATTTGCGGA TCATGGCGAC CGAAAAAGTT TCCAGCTTCC ATAGTGACGG GATAGACCTT
GCAGTGCGCC AAGGATCGCC GCCGTTTGGC GCATCACTGG ACGTAACCCT TTTATTCAAG
CAATCGCTAG TCGCGGTCGC CGCGCAAAAG CTTGCGGACA AGGGAGGCAC TCCTCTTGAT
CCAGAAACCC TTGCCAAACA GCCGAAGGTC CATGACGCCC ATGACCTATG GCCCAGCTAT
CTGGCGCATT TGGGCGTACA GGACCAGTCT GCTCGGCACC TTCGTCTGAG CCAGACGTCT
CTTGCGGTAG ATGCAGCTAT CGCAGGGCAA GGAGTGGCCT TGGTAAGCCG GTTTCTGGTT
GCTCATGACC TTGCAGCCGG ACGTTTGGTC GAGGTTGGCG AAGCCTGGGC CCCAGACAGA
AATGACTTCT ATGTCCTCAT GCCGCGAACC GCCAAAAACA ATGCGCCGAC GACCAACGTC
TTGACGTGGC TCAAGTCGCG CTCCGCCAAA GATACCTGA
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| Protein sequence | MTELPPLNSL RAFDAAGRRL SFRAAADELG VTQGAVAQQV RQLEAHFDVV LFERVPKGLA
FTPVGRSYHN RIAGVFADLR AATAELKPEP NKVLISVTPT FAAKWLIPNL PDFATAHPNI
DLRIMATEKV SSFHSDGIDL AVRQGSPPFG ASLDVTLLFK QSLVAVAAQK LADKGGTPLD
PETLAKQPKV HDAHDLWPSY LAHLGVQDQS ARHLRLSQTS LAVDAAIAGQ GVALVSRFLV
AHDLAAGRLV EVGEAWAPDR NDFYVLMPRT AKNNAPTTNV LTWLKSRSAK DT
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