| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3828 |
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| Symbol | |
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| ID | 4074979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 73771 |
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| End bp | 74475 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638004487 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_611222 |
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| Protein GI | 99077963 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 48 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0765989 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTAG AAAAAGTAGC TCTGATTACG GCGGGTGGCA GCGGCATGGG CGCGAACGCT
GCGCGCAAAT TGGCAGATGA TGGGTTCAAG GTTGGCATCC TGTCTTCGTC TGGCAAGGGC
GAAGCGCTTG GCGGTGAACT TGGCGGCTTT GGCGTAACGG GCTCCAATCT TGATGGAGAA
GCGCTGAACG AATTGGTCGA GGGTGCGAAG GATCGTTGGG GCCGCATTGA TGTCTTGGTG
AACTCTGCTG GCCACGGACC AAAAGGTCCG GTTCTCGAGA TCAGTGACGA GGATTGGCAT
CAAGGAATGG AAGTCTACCT GATGAACGTT ATCCGTCCGA CAAGGCTGAT CACACCTGTG
ATGCAAGCGC AGGGCGGCGG GGCGATCATC AACATCTCAA CCTTCGCGGC ATTCGAACCC
GATCCCCTTT TTCCAACGTC TGGCGTCTTC CGGGCCGGAC TTGCCGCATT CACAAAGCTC
TACTCGGATA AGTATGCATC AGAAAACATT CGCATGAACA ACGTCCTTCC GGGTTTCATA
GACAGCCTGC CTGAGACCGA AGACCGCAAA GCACGTATTC CAATGGGACG TTACGGTTTC
GCCTCGGAGG TGTCTTCTCT CATTTCGTGG CTCGCCTCGG AAAATGGTGG CTACATGACG
GGACAAAACC TGTGTATCGA CGGAGGGTTA ACCCGTGCCG TCTGA
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| Protein sequence | MTVEKVALIT AGGSGMGANA ARKLADDGFK VGILSSSGKG EALGGELGGF GVTGSNLDGE
ALNELVEGAK DRWGRIDVLV NSAGHGPKGP VLEISDEDWH QGMEVYLMNV IRPTRLITPV
MQAQGGGAII NISTFAAFEP DPLFPTSGVF RAGLAAFTKL YSDKYASENI RMNNVLPGFI
DSLPETEDRK ARIPMGRYGF ASEVSSLISW LASENGGYMT GQNLCIDGGL TRAV
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