| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3817 |
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| Symbol | |
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| ID | 4074968 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 66906 |
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| End bp | 68060 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638004476 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_611211 |
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| Protein GI | 99077952 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 0.315131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0342532 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGTCTA AACTGCCCCA TATTCTCGTG CTTTGCCTGC TGCCCGAAAT CGCCCTTTCC
CAAGGCGTGC CGACCAATGA CAGCGGGCTT ACTGCACGTG ACATCGTCGA GACCGGTGAC
CGGGAGGCAG ACCTTGCCAT CCAGGCTAAC AAGCTCTCCG TGCGCGAACT TATCGCTGAG
ATCGAGCGCG AACAGCTGGA AACACTGCAG CGCATCCTCG ATGCCCAAAC CAGCTTCGGC
GGCCAAGGCC TACCCGCGAT GGTTTCAGGG CTGGAAAACG GAAGCGGCGA TCCAGCCCGT
TCCGTCGAAG CGGTCTATGG CAATGCCGAG ATCGACCCCA ATCCCGGCGG CGCACAGATG
TTCGGGGATG CGGCAGAAAA CATCGAGCAG CTCATCATCC GCGTCGCCCA GGAAACCAGC
GGGTTTGCGG GCGTCGGCCG CGCGGGCCTC TCCCCAGTCC AATGGCGAGC GCTGCTGCAG
GCTCTCATCT GGCAGGAAAG CCGCTTCACC ATCGGCGCCC GCTCACCGGT CGGCGCCTTT
GGCCTCACCC AGATTATGCC CGGTACGGCC AGCGATCTCG GCATCAACCC GGAATATTAT
GACAGCCCCT ACCTGCAGGT GCATGGCGGC GCGCGCTATC TCGCCACCCA ACTCAACACC
TTCGATGGCA ATATCATCAA CGCGCTCGCG GCCTATAACG CCGGACCCGG TCGCGTGTTC
GAATATGGGG GCGTGCCACC CTTCCGCGAG ACCCAGCACT ACGTTCAGGT CATCCCCGAA
CGCTACAATC TCTACCTGGG CCGCATCGGC GGGATCGAAG CGCTCGGTAC GATCGACCCC
GCGCTTCTGG CAAATGCAAA CCTCTCCCTC ACGGGTCATG GGGCGGCCTT TTATGGCAAC
AACTCACCCG CTGCGATCAG GCAGGCCGCC CTGCGCATTG CGGACATCGT CGAGCGGATT
TCCGACACCG AAGACGTGCA GGAAAGCATC GCACTCAACA CCTATGCACG CGCCGAAATC
GTGCGCCTCG TGGCTGCCCG CGTCCGGCTG CAGGCCGCCC GCACCCGGCT GCTCTCCGCC
GAAGAGCTGG CCCAGGCCAG CGCCCGCATG GCCAAAGGCG CGTTCATGGA TTTTACGATT
AGGGAGATAG ACTGA
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| Protein sequence | MKSKLPHILV LCLLPEIALS QGVPTNDSGL TARDIVETGD READLAIQAN KLSVRELIAE
IEREQLETLQ RILDAQTSFG GQGLPAMVSG LENGSGDPAR SVEAVYGNAE IDPNPGGAQM
FGDAAENIEQ LIIRVAQETS GFAGVGRAGL SPVQWRALLQ ALIWQESRFT IGARSPVGAF
GLTQIMPGTA SDLGINPEYY DSPYLQVHGG ARYLATQLNT FDGNIINALA AYNAGPGRVF
EYGGVPPFRE TQHYVQVIPE RYNLYLGRIG GIEALGTIDP ALLANANLSL TGHGAAFYGN
NSPAAIRQAA LRIADIVERI SDTEDVQESI ALNTYARAEI VRLVAARVRL QAARTRLLSA
EELAQASARM AKGAFMDFTI REID
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