| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3622 |
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| Symbol | |
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| ID | 4075049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 679401 |
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| End bp | 680360 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005141 |
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| Product | putative GAF sensor protein |
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| Protein accession | YP_611851 |
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| Protein GI | 99078593 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0853279 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCTC TGACGCGGCA CATCGAACAT GTACTAAAAA CCGCGACCCA TCCGGGCGCG
GCCGCGCGCT CGCGCCTGGC AGCTTCATGG CGCCGGTCGC TCAACCATCA CGGGCTTGAT
CCGGGACAGC GCCGGGACGT GCAGCGCATC TGCGCCCGCT CCCTTGCCGA GCGGATGGAA
CAGGCCGATT GCATGCGCCG CATCGCGCTG CCCAAGATCG ATGCCCTGTT TCAGCTGGTT
GGCGGATCTG GTTGTGGTGT TCTGCTCACC GATTGCGATG GGGTTGTGCT CGACCTGCGC
GCAAGCGATG GCGATACCGA CACTTTCAAC GCATGGGGTC TGGCGCCGGG CGCGGATTGG
TCCGAGGCCT CCGAAGGCAC GAACGGGATC GGCACATGCA TTGCTGAGGC GCGACAGGTG
ATCATCCACC GCGAAGAACA TTTCCACGCT CGCAACACTG CCATGAGCTG CATGGACGCG
CCAATTTTTG GGGCTGATGG ACGCCTGATT GGCGCGTTGG ATGTCTCTTC GGCGCGGGCG
GATCAGACCG CGTCTTTCAA CCAGCTGATT GCCGCCAGTG TCGCTCAGAC GGCACGTCAG
ATCGAAGCCG ATGTGTTTCG TGCCGCTTTT CCGGAAGCGC GTATCATCAC CGCAGAAGCG
GGCACTGCGG AGGCGGCTAT ACTCTTGGCG GTGGACGGAG ATGACATTGT GCGAGGCGCC
ACACGGGCCG CACGAAAGGT CTTCAATCTG TCCCAAACCG GCCCCATAAG TCCTCGTCCT
GCGTCAGATC TGCTTGGGTC CGACGACGAT TCGAATGGGT TCGACGGGGC GGAACGGGCA
GCGGTGAACC GCGCCCTGTC TCGCACCAAC GGAAATGTAT CAGAGGCGGC ACGCCTGCTT
GGCATTGGCC GGGCCACGCT CTATCGCCGG ATGAAACGTC TCGGCATGCG TGGCGAATGA
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| Protein sequence | MSSLTRHIEH VLKTATHPGA AARSRLAASW RRSLNHHGLD PGQRRDVQRI CARSLAERME
QADCMRRIAL PKIDALFQLV GGSGCGVLLT DCDGVVLDLR ASDGDTDTFN AWGLAPGADW
SEASEGTNGI GTCIAEARQV IIHREEHFHA RNTAMSCMDA PIFGADGRLI GALDVSSARA
DQTASFNQLI AASVAQTARQ IEADVFRAAF PEARIITAEA GTAEAAILLA VDGDDIVRGA
TRAARKVFNL SQTGPISPRP ASDLLGSDDD SNGFDGAERA AVNRALSRTN GNVSEAARLL
GIGRATLYRR MKRLGMRGE
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