| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3572 |
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| Symbol | |
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| ID | 4075494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 612350 |
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| End bp | 613423 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638005086 |
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| Product | spermidine/putrescine-binding periplasmic protein-like |
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| Protein accession | YP_611803 |
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| Protein GI | 99078545 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0154888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0251545 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGAATT TTCTTATTGG CGCGGCGCTG ACCCTCGGCG GGACCATGGC GCAGGCGACG
GAGTATCTGA ACATTTTTAC GTGGGACGGG TATGTCGCGC CTGAGGAGGT CACCGCAGTC
AATGCTCTCC TGAAAGAGCA GGGGTACGAC ATCGAAGTGC GCGTGATGGA TACGCTCGCT
GAAGGGCCGG AACAGATGTT TGACGTGATC CGCTCGGGCG ATGTGGACGT GTCCTTCCTC
ACCCTGAACT ACATCAACAT GGAAGGCGTG CCGTTCTCGA ACCTTCTGCA GCCGATTGAC
GTTTCTTCTC CACGTCTGAG CAATGCGCAA GCTTTGTTGC CTGAGTTGAG CGCGATTGAG
ATGGGCATGT CCGACGCAGG TCCGCTCTAT CTGCCGTTTG GCGGCGGTGC CTACGGGATC
TGGGCCAACG ACGATGTGGT TGCCGAACAT CCGACATCGG TCGCCGAGCT GCTGAAGCCA
GAGTGGAAAG GTCGTATCTC CCTGACATCC GGTCAGGTGC AGCCCAATGT GGCACTTGCG
CTGATGGCAA TGGGCGAGCC TCCCTTTGCG GTTCAGGATG CGTCTGGCGA TCGCAAGAAA
GTGGCCGAGC TTCAAAAGGC TGATGGCGCG CTGCAGACAA CGTTGTCGAC GCTCTATGAT
CAGGTGGGCT TTTTCTGGAG TGCAGGACCT GAGTTCCGCG ATGATTTTGC CTTTGTGGCC
TCTTATGGTC CGGGCGCATC GGCCCATGTT GCCGAGGGGG GCAACTGGAG CCTCGTGAAC
TTTGACGAAG GCAGCACGGT TTGGCTCGAT ACCATCAACT TCTCCAAGAA GCTCGAGGGT
GACAAACTCG AAGCGGCGGA GATTTTTGCC AACTATTTCA TTGGCAAAGA GGTCCAAGAG
CGCATCGTGA ACGGTCTGGG CATGGTGGCG GCGACCACTT TGGTGGACGC CAACCCGATG
CTTGACGAAA ACCCCAATTT CTTTGCCGAA GATCTGTTCT GGCCACCTTA CACCAAAGTG
GCAAACAACG TCATGAACAT GCTGTCCAAA CGCGCCTCCG GCGGCGGCAG CTAA
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| Protein sequence | MRNFLIGAAL TLGGTMAQAT EYLNIFTWDG YVAPEEVTAV NALLKEQGYD IEVRVMDTLA
EGPEQMFDVI RSGDVDVSFL TLNYINMEGV PFSNLLQPID VSSPRLSNAQ ALLPELSAIE
MGMSDAGPLY LPFGGGAYGI WANDDVVAEH PTSVAELLKP EWKGRISLTS GQVQPNVALA
LMAMGEPPFA VQDASGDRKK VAELQKADGA LQTTLSTLYD QVGFFWSAGP EFRDDFAFVA
SYGPGASAHV AEGGNWSLVN FDEGSTVWLD TINFSKKLEG DKLEAAEIFA NYFIGKEVQE
RIVNGLGMVA ATTLVDANPM LDENPNFFAE DLFWPPYTKV ANNVMNMLSK RASGGGS
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