Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3465 |
Symbol | |
ID | 4075099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 489126 |
End bp | 489983 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638004974 |
Product | 5-carboxymethyl-2-hydroxymuconate delta-isomerase |
Protein accession | YP_611699 |
Protein GI | 99078441 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.847127 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTTTG CCACCTACAC CGCCGCGACT GAAACCTTTT ACGGTGTCAT CACCGACGCA GGCGCAATCG CCCTATCGCC GGAGTTCCCC GAGTGGCCCA CCCTACGCGA AGTGATTGAA AACAAGGGTC TTCACACCCT TGCCCAAGCG GCGAAGGGGC GGGATGTGAC CCATCCACTC GACCAGATCA CCTATCAGAT CCCGGTGCCC CGCCCGGAAA AAATCATCTG CGTTGGTGTC AACTTTCCCA ACCGCAACGC GGAATATAAG GACGGACAGG ACGCCCCCCC CAACATGTCG CTGTTTCCAC GATTTGCGCG CAGCTTTACC GGGGCGAACC ACCCGCTGAT CCGCCCGCCG GAAAGCCCGC AACTGGATTA CGAGGGCGAG ATCGCCATCG TCATCGGCAA GGGCGGACGC CGCATTTCTG AGGCAGACGC CTATGACCAC ATTGCCGCGA TAACCCTCTG TAATGAAGGC ACAATCCGCG ACTGGGTGCG CCATGCCAAA TTCAACGTGA CGCAGGGCAA GAACTGGGAC AGCTCCGGTG CCATCGGCCC GTGGCTGGTG CCCTTTACCG CGCCCGCGCA GCTTGATGAC GTGCGCATCA CCACCAAGGT CAATGGCGAG TTGCGTCAGG ATGATCGCAC CTCCCGGATG CTGTTCCCGA TCCGCCGTCA GATCGCCTAT ATCTCCACCT TTACCACGCT GGTTCCGGGC GACATCATCG TCACCGGCAC CCCCACCGGC GCAGGCGCAC GGTTTGATCC GCCAAAGTTC CTCAAACCCG GCGACGTGAT CGAGGTCGAG GGTGAAGGCA TCGGCATTCT GCGCAACGCA GTAGAGGATG AGGCATGA
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Protein sequence | MRFATYTAAT ETFYGVITDA GAIALSPEFP EWPTLREVIE NKGLHTLAQA AKGRDVTHPL DQITYQIPVP RPEKIICVGV NFPNRNAEYK DGQDAPPNMS LFPRFARSFT GANHPLIRPP ESPQLDYEGE IAIVIGKGGR RISEADAYDH IAAITLCNEG TIRDWVRHAK FNVTQGKNWD SSGAIGPWLV PFTAPAQLDD VRITTKVNGE LRQDDRTSRM LFPIRRQIAY ISTFTTLVPG DIIVTGTPTG AGARFDPPKF LKPGDVIEVE GEGIGILRNA VEDEA
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