| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3420 |
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| Symbol | |
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| ID | 4075594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 440986 |
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| End bp | 444114 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004929 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_611654 |
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| Protein GI | 99078396 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCAG AAGTCTTTGT CCGCCGCCCA CGCCTGGCCA TGGTGATTTC CATCGTCATA
ACCATCGCCG GCCTGATCGC CATGTCTGCC ATTCCGGTGG CGCAGTACCC CGAGATCGCG
CCCCCCACCG TCCAGGTCAG TGCCAGCTAT AGCGGTGCGG ACACGGCAAC CGTAGAAGAA
GCCATCGCGG TGCCGATTGA GAGCCAGGTC AACGGGGTTT CAGGCATGCG TTACATGCGC
TCCAACTCCA ACAACGCGGG CGAATACAGC CTCACTGTGA GCTTCGAGTT GGGTGAAGAC
CCGGATCTCG CCACCGTGAA CGTGCAAAAT CGCGTAAAGT TGGCTGAACC CCGACTTCCA
CAGGCGGTGC GCGATCAGGG CCTTCAGATC AAAAAGGCCT CCACGGACAT CTTGCAGGTC
TTTACTTTTC ACTCAGACGA CCCGGCGCAT GACCAACTGT TCCTCGCCAA TTTCGTCGCG
ATCAACATCA TCGACGAGCT AAAGCGCATC GACGGCGTAG GGGACGTGTT CAACTACGGT
GTCCGGGACT ACGCGATGCG CATCTGGCTT GATCCGCAAA AAATGTCGGA TCGCGAGATG
AGCGTCGACG ACATCGTAAG CGCCATACGC AGCCAGCACC TGCAGGCCTC GGCCGGGCGG
ATCGGCGCGG CCCCTCTTGT GGAAGATGGT GCGGGCTTGC AGATGACGAT TGTTACCAAA
GGCAAGCTGA CCAGCGCCGA TGAGTTCGAA AACATCATCC TCCGCAGCGA GACCGATGGA
TCTTTTGTGC GCGTCAAGGA TGTGGCCCGC GTGGAGCTTG GCGCAGCGAC CTACGATGTC
GAGACTCGAT TTGAAGGCAC GCCGAGTGCG CCAATAGCGG TGTTTCTCTC CCCCGGAGCT
AATGCGGTCG CGGTGGCCGA AACCGTGCGC CACAAGCTCG AAGAGTTGCA GGAACGGTTT
CCCGACGGCG TAAGCTACAG CTTTATCTAT GACACCGCCG AATTTGTCGA AGCCATGATC
AAGAAGGTGG AACACACGCT GATCGAGGCC TTTGTCCTTG TCGGCATCGT TGTGTTTGTC
TTTCTGGGAC GCTTGCGCCC GACGCTCATT CCGCTGATCG CGGTTCCCGT TTCGATCGTG
GGCACATTCG CGGTGCTCTT GGCGCTTGGG TATTCGGCCA ATACGATTTC GCTCTTGGCG
ATGATCCTTG CAATTGGAAT CGTGGTGGAT GACGCGATCG TGGTGGTCGA GAACGTCGAA
AAGGTCATGC ATGAAGAGCC GCACCTGTCG CCCGCCGACG CGACGCGCAA GGCCATGAAA
GAGATCACCG GGCCGATCAT TGCAATCACG CTGGTGCTAT TGTCGGTCTT TGTGCCGGTG
GCATTCCTGC CCGGATCAAG CGGCGTCCTG TTTCGCCAGT TCGCGGTTAC CATCTCGGCG
GCAATGGTGA TTTCTGCGAT CAATGCGCTG ACGCTCTCTC CTGCCCTCTG CGCGATCCTG
ATGAAACCTG GCGAACCGAT CCGCTTCATG CGTAGGGTCT CTGATGGGAT CGATGCCTTC
AGCCGAGGCT ATGGCAACCT GATCCGCAGG CTGGCGCGTT TGGCTGTATT GAGCCTGGCC
CTGACGGCGC TCTTTGGCTT TGCGACCTTC CGGCTGGGCA GCATTACCCC CTCGGGATTT
CTGCCGGCAG AAGACAAGGG TTTCATCCTT GCGGTCGCAA CCCTGCCCCC CGGTGCCTCG
TTGGATCGGA CCACCGCCGT GCTGGAGGCA GGCGACGCCC TGATCCGCCA GGAAGAGGGC
GTCGAGAGCA TCGTTACCAT CGCAGGTTTC AGCCTGATCG ACGGTGGTCT GGCCTCGAAT
GCGGGCATCG TCTTTATCCG TCTTGCGGAT TTTGCCGATC GCGAAGACCC TGCCATGCAC
TCGACGGAGA TCGTGCGACG GATCACGGGC CGCCTGCAGC AGATCGGCGG CGCCAACTTC
ATCGCCTTGA ACCCACCAGC GCTTCCGGGC GCCGGGGCGA CGGGCGGCTT TGAGATGATG
CTGGAGGCGC TACAGGGGCA ATCGCCGCGC GAGATGGCAG CCGTCATGAA CGGGGTCGTC
GTCTCCGCCA ATCAGGACCC GCGTCTCTCG GCGGTTTACT CTACCTTTGA GGCAGCCACT
CCACAGGTGC GGCTCGATAT TGATCGGGAC CGGCTCTACA CGCTGGGGCT GACACTGCCG
CAGGTGTTTT CTTCTCTGCA GGGCACGTTG GGCGGGGTCT ACGTGAACGA CATTACCCTC
TTTGGCAAAG GCTTTACGGT TTGGGTCAAT GGCGATGCAG ACTACCGAGG CAACATTGGC
GCGATCAACA ACATCCGCAT CCGAAATGCG TCGGGCGAAA TGGTGCCGGT CTCATCCTTT
GCGACCGCGC GCCTAGAATC CGGCACACGC TCTCAGGTGC GCTACAACAA CTATCGCGCT
GTGGCGATAA ACGGCAGCCC GGCCGCTGGC GTGGGCGATG GCGATGCAAT TACCGCAATG
GAGGAAATCG GCGCAGCAAC CATCCCGGAT GGGTTTGCCT ATGAGTGGAC CGGCATGGCG
TCCGAGGTCA AAAGCTCGGC CGGGCAAACG GGGATTGTTC TGGGCTTTGC CCTGCTCTTT
GCCTATCTGT TTCTGGTCGC GCTCTACGAG AGCTGGAATG TCCCGGTGGG CGTCATGCTT
TCTGTGGTGG CCGCGGTAAT GGTCGCCATT TTTGGCGTCT GGGTCGCGGG ATCTTCCCTT
GATGTCTATG TTCAGATCGG AATCGTGGTT CTCATCGCGC TGGCGGCCAA GAACGCGATC
CTGATCGTAG AGTTTGCTTT GTTGCGATTG GGAGAGGGCA AATCGATTGA GGACGCCGCC
GCCTTGGGGG CGCAAGAGCG TTTCCGTCCG GTGATGATGA CTTCTTTTGC CTTTATCGCA
GGTCTGGTTC CGCTGGTAAC TGCCTCGGGT CCGGGGGCTG ACAGCATGTT CGCCGTTGGG
GTGCCAGTCT TTGCGGGGAT GATCGGATCC GCTGTCATTG GCGTGATCTT GATCCCCTTG
TTGTTCATCG TGTTTGAGCA CATGCGCAGC TGGAGCAGGC GCGCATCTCC TGCTGCGGAC
AGCCAATAA
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| Protein sequence | MISEVFVRRP RLAMVISIVI TIAGLIAMSA IPVAQYPEIA PPTVQVSASY SGADTATVEE
AIAVPIESQV NGVSGMRYMR SNSNNAGEYS LTVSFELGED PDLATVNVQN RVKLAEPRLP
QAVRDQGLQI KKASTDILQV FTFHSDDPAH DQLFLANFVA INIIDELKRI DGVGDVFNYG
VRDYAMRIWL DPQKMSDREM SVDDIVSAIR SQHLQASAGR IGAAPLVEDG AGLQMTIVTK
GKLTSADEFE NIILRSETDG SFVRVKDVAR VELGAATYDV ETRFEGTPSA PIAVFLSPGA
NAVAVAETVR HKLEELQERF PDGVSYSFIY DTAEFVEAMI KKVEHTLIEA FVLVGIVVFV
FLGRLRPTLI PLIAVPVSIV GTFAVLLALG YSANTISLLA MILAIGIVVD DAIVVVENVE
KVMHEEPHLS PADATRKAMK EITGPIIAIT LVLLSVFVPV AFLPGSSGVL FRQFAVTISA
AMVISAINAL TLSPALCAIL MKPGEPIRFM RRVSDGIDAF SRGYGNLIRR LARLAVLSLA
LTALFGFATF RLGSITPSGF LPAEDKGFIL AVATLPPGAS LDRTTAVLEA GDALIRQEEG
VESIVTIAGF SLIDGGLASN AGIVFIRLAD FADREDPAMH STEIVRRITG RLQQIGGANF
IALNPPALPG AGATGGFEMM LEALQGQSPR EMAAVMNGVV VSANQDPRLS AVYSTFEAAT
PQVRLDIDRD RLYTLGLTLP QVFSSLQGTL GGVYVNDITL FGKGFTVWVN GDADYRGNIG
AINNIRIRNA SGEMVPVSSF ATARLESGTR SQVRYNNYRA VAINGSPAAG VGDGDAITAM
EEIGAATIPD GFAYEWTGMA SEVKSSAGQT GIVLGFALLF AYLFLVALYE SWNVPVGVML
SVVAAVMVAI FGVWVAGSSL DVYVQIGIVV LIALAAKNAI LIVEFALLRL GEGKSIEDAA
ALGAQERFRP VMMTSFAFIA GLVPLVTASG PGADSMFAVG VPVFAGMIGS AVIGVILIPL
LFIVFEHMRS WSRRASPAAD SQ
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