| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3376 |
|---|
| Symbol | |
|---|
| ID | 4075275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 390288 |
|---|
| End bp | 390584 |
|---|
| Gene Length | 297 bp |
|---|
| Protein Length | 98 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638004884 |
|---|
| Product | sarcosine oxidase, delta subunit, heterotetrameric |
|---|
| Protein accession | YP_611610 |
|---|
| Protein GI | 99078352 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4311] Sarcosine oxidase delta subunit |
|---|
| TIGRFAM ID | [TIGR01374] sarcosine oxidase, delta subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.583809 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCA ACCATCCGCT TCTGGGGCCA CGAGACGCGC AGGAGTTTAC CTATCTGGGC
GACGCGGGTC TGATCAACCG TCCCTACTGG CTGTCGGAGA ACGCCATGCG CGCATTTCAT
GACTATCTGC ATCTGCGCGA GAACCCGGCA GGGCTGCATC GCGAACTCTG GTTCCACGAG
CAGGGTGACC GCTCCTGGCT CGTGGTGACC CGGGACACAA CCACACATGA AATCACGAAG
GTCGAGCTGG CCCGCGACGT GGCCCGCGCA AGCCGTTCAG CAGAGGTCAG CCAATGA
|
|---|
| Protein sequence | MIINHPLLGP RDAQEFTYLG DAGLINRPYW LSENAMRAFH DYLHLRENPA GLHRELWFHE
QGDRSWLVVT RDTTTHEITK VELARDVARA SRSAEVSQ
|
|---|
| |