| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3330 |
|---|
| Symbol | |
|---|
| ID | 4075735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 340248 |
|---|
| End bp | 340973 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638004838 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_611564 |
|---|
| Protein GI | 99078306 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.274537 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCG AAGCCAGTAA TATTCATAAG AGTTTCAATG GCACCGAGGT GCTAAAGGGC
GTCTCGCTTG CGATGAAAAA GGGCGAGTTC ATAGCGCTCC TCGGCGCTTC CGGCTCGGGA
AAGACCACTC TGTTGAATAT CATAGCGGGT CTGCAGCAGG CGGATCGGGG GCAATTGCAT
CTTGATGGTC GCGACATTAC CGGGCTGGCG GCGGGCAAGC GCCGCTTTGG CATGGTGTTT
CAAAACTACG CGTTGTTTCG CCACATGACG GTGGCCGATA ACATCGCCTT CGGTCTGCGG
GTTTTGCCGC GTCGCGCGCG CCCTGGTCGT GCAGCGCGTG ACGCCAAGGT CTCGGAGCTT
CTGGAGATGA TCGGCCTTCA GGATCTTGGC GACCGTTTTC CGCAGCAACT CTCTGGCGGG
CAGCGCCAGC GCGTGGCGAT GGCGCGGGCC CTGGCGATCA ATCCGCAGCT TCTGTTGATG
GATGAGCCCT TTAGTGCACT GGATGCGCAG GTGCGCCGGT CTCTGCGCAG CTCTGTGCGC
ACATTGCAGC AAAAGGTTGG GGTGGGCGCG ATCATGGTGA CGCATGATCA GGCCGAAGCC
TGGGATCTTG CGGACCGCGT GGCCGTGATG GATCAGGGGC AGATCGTGCA GTTCGACACC
CCGGATGCGC TGCGTGACCG GCCGGCGACT GGGGCCGTAA GAGAGCTACT GCAAGGCGCG
GCCTGA
|
|---|
| Protein sequence | MTFEASNIHK SFNGTEVLKG VSLAMKKGEF IALLGASGSG KTTLLNIIAG LQQADRGQLH
LDGRDITGLA AGKRRFGMVF QNYALFRHMT VADNIAFGLR VLPRRARPGR AARDAKVSEL
LEMIGLQDLG DRFPQQLSGG QRQRVAMARA LAINPQLLLM DEPFSALDAQ VRRSLRSSVR
TLQQKVGVGA IMVTHDQAEA WDLADRVAVM DQGQIVQFDT PDALRDRPAT GAVRELLQGA
A
|
|---|
| |