| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3298 |
|---|
| Symbol | |
|---|
| ID | 4075701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 303158 |
|---|
| End bp | 304633 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638004805 |
|---|
| Product | BCCT transporter |
|---|
| Protein accession | YP_611532 |
|---|
| Protein GI | 99078274 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.183438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGATA ACAACTCCAA GAGCCACCTG GTGGCGAAGT CCGGCTTCTT TGCCGGTCTC
CATCCGGGGA TGGGCACTGC CGCAAAAGGA ATGATCGCCT TTTTTGTCAT CTTCACCGTG
TTGAACGTGG ACTTGGCAAG CGGGCTATAC GCGTCCGTGC GCGCCTGGAT CGAAGGCTGG
TTCAGCTGGT ATTACATTTC GCTGCTGATC GGCGTGATGT TCTTCTGCTT CTGGCTGATG
GGGTCGCGAT TTGGCAAGTT GCGGCTTGGA GAGGACGACT CGCGCCCCGA GTTTGGCAAG
TTCAGCTGGT TTGCGATGCT GTTTTCGGCC GGGATCGGTG TCGGCATCCT GTTCTTTGGC
GTGGCAGAGC CGATCTTCTA CTTCGACAAT TCCGGCGCCT TTGGGTATCC CAATAACCCA
CACGCCGATA TGGCGGGCCA TATGGACATG GACATGTTGC GCGCCCGGGA CGCGATGCGG
GTGGCGTTCT TCCACTGGGG TTTTCACGGT TGGGCGCTGT ATGTGCTGGT CGGCTTGTGT
CTCGCCTATT TCGGGTTTCG CAAACGGCTT CCTCTGACCA TGCGCTCCAC GCTCTATCCG
ATCCTAGGCG AGCGGATTTA CGGCCCGTGG GGGCATCTTG TGGACTTGCT GGCGGTGTTT
GGTTCGGTGT TTGGCATTGC AACCTCGCTG GGACTGGGCT CCACGCAGAT CGCGACGGGA
TTGAACGTGC TGTTCGGATT GGAAGTAACC CTGACCCTGA AAATCGTGCT TATCGTGATC
GTATCTGTCA TCGCCACTGC CTCGACCGTA TCAGGCGTTG CCCGCGGCAT CCGCTTTATC
TCGGAATGGA ACATCTGGCT TTCGATCGCT CTGCTCTTGG GGTTCCTGGT TTTGGGACCA
GCAAAATGGC TGATGGCGTT CTTCATCACC TCAGTCGGGG ACTACCTGTG GCACTTCATC
CCGATGGGAT ACTGGACCGC AACCGAAGAA CCAAATGTCG CCTGGCAGGG CGGTTGGACC
ATCTTCTATT GGGGGTGGTG GATCGCCTGG GCACCGCTGG TGGGCATGTT TATCGCGCGG
ATTTCCTATG GCCGCACCAT CCGTGAGTTC ATGGTTGGGG TGCTCTGCGT GCCGACCATT
GCCGTCTTCT TCTGGCTCTG CATCTTCGGC GGCACCGCGA TCTGGCAAGA GATGCACATG
GCCGGTGGAC CAGCGGCTGA AGGCGGCGCA GGCATCATTG CGACCGTCCG CAATTGGGAG
TTGCCTGGAG CGCTTTACGG CACCATTGCC AACATCGGCG AGACGTCCTG GATGGGTGAC
ATGAGCTGGA CCGCCTGGCC GATGTCGCTG CTGGCCAACC TCTCCATGTT TGAGCGTGGC
GCGAAGGATC TTGTGGTCTT TATGGACGAT CTGGAGAGTG TGGTTGGGTC GGGCCGCAAG
CTCACGGCAA ACGAGCTTCG CAAACGCATT CAGTGA
|
|---|
| Protein sequence | MSDNNSKSHL VAKSGFFAGL HPGMGTAAKG MIAFFVIFTV LNVDLASGLY ASVRAWIEGW
FSWYYISLLI GVMFFCFWLM GSRFGKLRLG EDDSRPEFGK FSWFAMLFSA GIGVGILFFG
VAEPIFYFDN SGAFGYPNNP HADMAGHMDM DMLRARDAMR VAFFHWGFHG WALYVLVGLC
LAYFGFRKRL PLTMRSTLYP ILGERIYGPW GHLVDLLAVF GSVFGIATSL GLGSTQIATG
LNVLFGLEVT LTLKIVLIVI VSVIATASTV SGVARGIRFI SEWNIWLSIA LLLGFLVLGP
AKWLMAFFIT SVGDYLWHFI PMGYWTATEE PNVAWQGGWT IFYWGWWIAW APLVGMFIAR
ISYGRTIREF MVGVLCVPTI AVFFWLCIFG GTAIWQEMHM AGGPAAEGGA GIIATVRNWE
LPGALYGTIA NIGETSWMGD MSWTAWPMSL LANLSMFERG AKDLVVFMDD LESVVGSGRK
LTANELRKRI Q
|
|---|
| |