Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3298 |
Symbol | |
ID | 4075701 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 303158 |
End bp | 304633 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638004805 |
Product | BCCT transporter |
Protein accession | YP_611532 |
Protein GI | 99078274 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.183438 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGATA ACAACTCCAA GAGCCACCTG GTGGCGAAGT CCGGCTTCTT TGCCGGTCTC CATCCGGGGA TGGGCACTGC CGCAAAAGGA ATGATCGCCT TTTTTGTCAT CTTCACCGTG TTGAACGTGG ACTTGGCAAG CGGGCTATAC GCGTCCGTGC GCGCCTGGAT CGAAGGCTGG TTCAGCTGGT ATTACATTTC GCTGCTGATC GGCGTGATGT TCTTCTGCTT CTGGCTGATG GGGTCGCGAT TTGGCAAGTT GCGGCTTGGA GAGGACGACT CGCGCCCCGA GTTTGGCAAG TTCAGCTGGT TTGCGATGCT GTTTTCGGCC GGGATCGGTG TCGGCATCCT GTTCTTTGGC GTGGCAGAGC CGATCTTCTA CTTCGACAAT TCCGGCGCCT TTGGGTATCC CAATAACCCA CACGCCGATA TGGCGGGCCA TATGGACATG GACATGTTGC GCGCCCGGGA CGCGATGCGG GTGGCGTTCT TCCACTGGGG TTTTCACGGT TGGGCGCTGT ATGTGCTGGT CGGCTTGTGT CTCGCCTATT TCGGGTTTCG CAAACGGCTT CCTCTGACCA TGCGCTCCAC GCTCTATCCG ATCCTAGGCG AGCGGATTTA CGGCCCGTGG GGGCATCTTG TGGACTTGCT GGCGGTGTTT GGTTCGGTGT TTGGCATTGC AACCTCGCTG GGACTGGGCT CCACGCAGAT CGCGACGGGA TTGAACGTGC TGTTCGGATT GGAAGTAACC CTGACCCTGA AAATCGTGCT TATCGTGATC GTATCTGTCA TCGCCACTGC CTCGACCGTA TCAGGCGTTG CCCGCGGCAT CCGCTTTATC TCGGAATGGA ACATCTGGCT TTCGATCGCT CTGCTCTTGG GGTTCCTGGT TTTGGGACCA GCAAAATGGC TGATGGCGTT CTTCATCACC TCAGTCGGGG ACTACCTGTG GCACTTCATC CCGATGGGAT ACTGGACCGC AACCGAAGAA CCAAATGTCG CCTGGCAGGG CGGTTGGACC ATCTTCTATT GGGGGTGGTG GATCGCCTGG GCACCGCTGG TGGGCATGTT TATCGCGCGG ATTTCCTATG GCCGCACCAT CCGTGAGTTC ATGGTTGGGG TGCTCTGCGT GCCGACCATT GCCGTCTTCT TCTGGCTCTG CATCTTCGGC GGCACCGCGA TCTGGCAAGA GATGCACATG GCCGGTGGAC CAGCGGCTGA AGGCGGCGCA GGCATCATTG CGACCGTCCG CAATTGGGAG TTGCCTGGAG CGCTTTACGG CACCATTGCC AACATCGGCG AGACGTCCTG GATGGGTGAC ATGAGCTGGA CCGCCTGGCC GATGTCGCTG CTGGCCAACC TCTCCATGTT TGAGCGTGGC GCGAAGGATC TTGTGGTCTT TATGGACGAT CTGGAGAGTG TGGTTGGGTC GGGCCGCAAG CTCACGGCAA ACGAGCTTCG CAAACGCATT CAGTGA
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Protein sequence | MSDNNSKSHL VAKSGFFAGL HPGMGTAAKG MIAFFVIFTV LNVDLASGLY ASVRAWIEGW FSWYYISLLI GVMFFCFWLM GSRFGKLRLG EDDSRPEFGK FSWFAMLFSA GIGVGILFFG VAEPIFYFDN SGAFGYPNNP HADMAGHMDM DMLRARDAMR VAFFHWGFHG WALYVLVGLC LAYFGFRKRL PLTMRSTLYP ILGERIYGPW GHLVDLLAVF GSVFGIATSL GLGSTQIATG LNVLFGLEVT LTLKIVLIVI VSVIATASTV SGVARGIRFI SEWNIWLSIA LLLGFLVLGP AKWLMAFFIT SVGDYLWHFI PMGYWTATEE PNVAWQGGWT IFYWGWWIAW APLVGMFIAR ISYGRTIREF MVGVLCVPTI AVFFWLCIFG GTAIWQEMHM AGGPAAEGGA GIIATVRNWE LPGALYGTIA NIGETSWMGD MSWTAWPMSL LANLSMFERG AKDLVVFMDD LESVVGSGRK LTANELRKRI Q
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