| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3273 |
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| Symbol | |
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| ID | 4075415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 275643 |
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| End bp | 276200 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004782 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_611509 |
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| Protein GI | 99078251 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCCTC TTTCAACACT CGCGTTTGAA AGCGCACCGG TCGGCCTCAT TTATGCCGAG
GACCGGGTGA TCAAGCTGTG CAACACGCGG TTCTCCGAGA TGTTTGGTTA CCGAAAGGCC
GAGCTTGAGG GGCATTCCTT ATCCAAGCTT TACCCCTCCT CCGACGAGTT TCAGCGCATT
GGCCAGATCG GGGTCGAAAA GATGCGCGGC CTTGGACGCT ATGCCGATGA ACGCATCATG
CGCCGCAAGG ATGAGAGCCT GTTTTGGTGC CGCGTGCGCG GGCAATCGCT CGCCCCACAA
GATCCCTTTG CTCAATCGGT CTGGAGCTTT GCCGATATCT CGGAGAAGCG CCCGGTCACG
GAAATGACAC GCCGCGAACG GCAGGTGGCC AAGATGTTGG CCGAAGGGCT GACTTCAAAG
GAGATTGCCC GTGGCCTCGA GATCAGCCCC CGCACGGTCG AGGTGCATCG CGCCCGGCTG
ATGGACAAGT TCGGCGCGCG CAACGGGCTT GAGCTGGTCG CCCATCTGGC GGGGCTGCCG
CTTGGCGGCA CATCCTGA
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| Protein sequence | MEPLSTLAFE SAPVGLIYAE DRVIKLCNTR FSEMFGYRKA ELEGHSLSKL YPSSDEFQRI
GQIGVEKMRG LGRYADERIM RRKDESLFWC RVRGQSLAPQ DPFAQSVWSF ADISEKRPVT
EMTRRERQVA KMLAEGLTSK EIARGLEISP RTVEVHRARL MDKFGARNGL ELVAHLAGLP
LGGTS
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