Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3266 |
Symbol | |
ID | 4075408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 267890 |
End bp | 268942 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638004775 |
Product | periplasmic binding protein/LacI transcriptional regulator |
Protein accession | YP_611502 |
Protein GI | 99078244 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.700035 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.539349 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACACT ATCTCAGCAC CGTGGCGCTT GGCGCCGCCC TGGCCCTGGC CACGTCATCG GCCTTTGCCC AGACGGTTGG CCCCAAGGGC GAGGCCGCGA CACCAACGGC ATCGATCATG GTCGAAGACG GAGACCTCGA GACGATCCGC AGCGGCAATC ACACCGCCGC GCTCCTTTGG CATGACCAAA GCGATTTTGT AAATGCTGTG ACGGCAGGCG CGACCGATGA GCTGGCGCGC GCCGGGATCG AAGTCGTCGC CACCGCAAGC GCCGGGTTCG ACGCCGCCAA ACAGCGAAGC GATATCGAAA CCGCCCTGAG CAAAGACCCG AGCATCATCC TGTCACTCCC CCTCGATCCG GTAACCTCTG CCGCCGCGTT TGAGGAAGCC AAGGAAAACG GCGTGAAGCT GGTGTTCCTG TCCAACGTGC CCTCTGACTA TGAACACGCA AAGGATTACG CGGCGATTGT CACCGACGAT CTGTTCCAGA TGGGCAAGCA GGCTGCAGAC GCGCTGGCCG CATCCATGGG CGGGGCGGGC ACCGTGGGCT GGATCTACCA TGACGCCGAC TATTATGTGA CCAACCAGCG CGATAACGCC TTCAAGACCA CCATTGAAAA CGACTACCCG GAAATTTCAA TCGTAGCAGA GCAAGGCATC AGCGACCCTG CCCGCGCTGA GGACATTGCC AACGCGATGT TGCTGCGCAA CCCTGACATC GGGGGCATCT ACGTGACCTG GGCTGGTCCC GCCGAGGGCG TTCTGGCCGC ACTTCGGGCA AATGGCAATG ACACCACCAA AGTGGTGACG CTTGATCTCT CGGAGCCGGT GGCGCTCGAT ATGGTTCGGG GCGGCAATGT TGCAGCCATC GTTGCCGACG AAGCCTATGA GCTAGGCCGC GCCATGGCCG CAGCTGCGAT CCTTGATCTT TTGGGCAAGG ACGTCCCTCC ATTCGTGGTG GCCCCCGCAG TGACCGTCAC CGCTGAGAAT GTGGCCGAAG GCTGGATGCG ATCCCTGCAC ATCGACGCCC CAAAGAGCGT CACTGGCAAC TGA
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Protein sequence | MKHYLSTVAL GAALALATSS AFAQTVGPKG EAATPTASIM VEDGDLETIR SGNHTAALLW HDQSDFVNAV TAGATDELAR AGIEVVATAS AGFDAAKQRS DIETALSKDP SIILSLPLDP VTSAAAFEEA KENGVKLVFL SNVPSDYEHA KDYAAIVTDD LFQMGKQAAD ALAASMGGAG TVGWIYHDAD YYVTNQRDNA FKTTIENDYP EISIVAEQGI SDPARAEDIA NAMLLRNPDI GGIYVTWAGP AEGVLAALRA NGNDTTKVVT LDLSEPVALD MVRGGNVAAI VADEAYELGR AMAAAAILDL LGKDVPPFVV APAVTVTAEN VAEGWMRSLH IDAPKSVTGN
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