| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3220 |
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| Symbol | |
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| ID | 4075362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 216964 |
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| End bp | 217980 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638004729 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_611456 |
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| Protein GI | 99078198 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00317601 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT TCTTGGGACT TACCGCTGTT GCATCCGTGA GCTTTGCCTT TGCGGCAGAA
GCCATGGCCA CAGAGTGGAA TGTCTCGGTT TGGGGCAAAC GCCGCGCCTT TACCGAGCAC
GTCGAAAAGC TCGCTGAACT GGTGTCCGAG AAAACCGACG GCGAATTCAC CATGAACATC
AGCTATGGTG GACTGTCCAA AAACCGCGAG AACCTCGACG GGATCTCGAT TGGCGCGTTT
GAGATGGCGC AGTTCTGCGC CGGCTATCAC CGCGACAAAA ACCGCGTGAT TACCGTTCTT
GAATTGCCCT TCCTGGGCAT TTCCAACCTC GAAGAGGAGG TTGCGGTCTC TAGCGCGGTC
TACAACCACC CGGCCGCAGC CGAGGAAATG GCGCAGTGGA ACGCAAAGCT GCTCATGACC
TCGCCGATGC CGCAATACAA TATCGTCGGC ACCGGTGATG TGCGTGATGA TCTGGCGGAA
TTTGAAGGCA TGCGCGTGCG GGCAACCGGC GGTATCGGCG AAGCCTTCAA GGCTGTTGGC
GCCGTTCCGA CCTCCGTCAC CGCGACCGAG GCCTATCAGG CGATGGAATC CGGTGTGGTC
GACACCGTAG CGTTCGCACA ACATGCGCAT CTGAGCTTTG GCACCATCAA CCGCGCTGAC
TGGTGGACCG CTAACCTCAA CCCCGGCACC GTGAACTGCC CGGTTGTGGT CAATATTGAC
GCTTACGAAA GCCTCTCTGA CGCCGAGCGC GAAGCGCTGG ACAGCTCGGT TGCCGAAGCG
CTGGATCACT ACCTGGCGAA CTACGGCGAG CTGCTGAAGA AGTGGGATAG TGTTCTCGAG
GAAAAAGGCG TCGAAAAGGT CGAGATTTCG GAAGAGGTGC TCGCAGAATT CCGCTCTACT
GCGGCTGAGC CGATCCGCGA CGCTTGGATC AAGGATATGG AAGCACAGGG CCTGCCGGGT
CAGGAGCTCT ATGATCTAGT TCAGAAAACG CTCGCAGATC ACCGCAACGG CAGCTGA
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| Protein sequence | MKKFLGLTAV ASVSFAFAAE AMATEWNVSV WGKRRAFTEH VEKLAELVSE KTDGEFTMNI
SYGGLSKNRE NLDGISIGAF EMAQFCAGYH RDKNRVITVL ELPFLGISNL EEEVAVSSAV
YNHPAAAEEM AQWNAKLLMT SPMPQYNIVG TGDVRDDLAE FEGMRVRATG GIGEAFKAVG
AVPTSVTATE AYQAMESGVV DTVAFAQHAH LSFGTINRAD WWTANLNPGT VNCPVVVNID
AYESLSDAER EALDSSVAEA LDHYLANYGE LLKKWDSVLE EKGVEKVEIS EEVLAEFRST
AAEPIRDAWI KDMEAQGLPG QELYDLVQKT LADHRNGS
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