| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3213 |
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| Symbol | |
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| ID | 4075317 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 208049 |
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| End bp | 209620 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004722 |
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| Product | hypothetical protein |
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| Protein accession | YP_611449 |
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| Protein GI | 99078191 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.628959 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAACAG TCGGACACGC CTTGGCACAA ACCCTTGTTG AGCAGGGCAC CGAGATCATC
TTTGGCATCC CCGGCGTGCA CACCATCGAG CTCTATCGTG GCATCGAAGG CGCAGGTATC
CGTCATATCA CACCGCGTCA TGAACAGGGT GCGGGATTTA TGGCAGACGG ATATGCCCGT
ATCGCTGGCA AGCCCGGCGT TGTCTTCGTG ATCACCGGAC CGGGTTTGAT CAACACGTTG
ACCCCGATGG CGCAGGCCCG CGCGGACAGC ATTCCAATGA TCGTGGTCAC CGGCGTCAAC
CGGCGCGACA GTCTTGGCAA GGGTCTCGGC CTCTTGCATG AGTTGCCAGA TCAACTGGGT
CTGTCGCAAA CGATATCCAA ACATGCCGAG CAAGTCGAAG ACGCATCGGC GCTCGAAGGG
GTGATGGCCC GCGTGTTTGG CGCTCTTCAA GGGCGCCCTG CCCCGGTCCA CGTCGAAGTG
CCGACGGACG TCATGACCCT ACCGGCGTCC GAAACGGTGA CGATCCCGGA TCCAGAGCCA
AAGGCTGCAA GCGATCTGAC TCCGATCCTG GATGCCCTGG CCCGATGCGA GAGTCCTGTG
ATCCTCGCGG GGGGCGGCTG CCGCACGCAG AACCTTGCGC TCTTGAAACT GGCACAAAGG
CTCGATGCGC CCGTCGTCCA GACCGTGAAT GCGCGTGGCC TGATGCATGC ACATCCCCTG
ACGGTTCCAG CCAGTCCGTC CCTTCAATCG GTGCGAGATC TCATTGCGGA AGCGGATTGT
GTTCTGGCTC TTGGAACCGA AATGGGGCCA ACCGACTACG ACATGTATGC GACCGGGACC
TATCCGGAGA TGAGCAACCT TCTGCGGATC GACATTTGTG ACGATCAACT CTCGCGCCAT
GAGGCTGCCT GCAGGCTCAC CGGGGATCTG AACGAAATTC TACCCGTTCT GGCCGAACAA
TCCCCGGGAA AATCAAATGC GCGTGGATCT GAGCGTGCAG AAAAGGCGCG CCTTGCGGCG
CGCGCCGAAA TCGAAGCGCT GACACCCGGG TATGCGCGTT TCGTATCGCA GATCGAGACG
CTGAGGGATG CTTGTCCAGA CGCTATTTTT GTCGGGGATT CCACGCAAGC GGTCTATGCG
GCCAACCTCT ATTATGACCA CAACCGCCCC GGAGGCTGGT TCAACGGCGC GACTGGTTTT
GGGGCCCTCG GCTACGCAAT CCCCGCCGCG ATTGGCGCCG CTCTTGCCGA TCCATCGGCA
CCGGTGGTCG CGCTGATGGG CGACGGCGGT GCGCAGTTCA CGCTGCCAGA GCTTGGCGTT
GCCCGCGATG AAAACCTGCC CATCCTGTTT GTCGTCTGGA ACAACAATGC GTTCCTGGAA
ATCTCGAACG CAATGGAGGC CGCAGGAATC TCTCCGACAG GCTGCCACCC TTCTGCACCT
GATTTTGAGG CAGCTGCCGC CGCATACCGG CTCGATTTTC GGCGGATCGC ACCAGAGCAA
CTTCAGAACG CGTTGTCCGA GATCCTCCCA CTCAATGGTC CGATGCTGCT CGAGATCGAT
ATGACGGGCT AG
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| Protein sequence | MRTVGHALAQ TLVEQGTEII FGIPGVHTIE LYRGIEGAGI RHITPRHEQG AGFMADGYAR
IAGKPGVVFV ITGPGLINTL TPMAQARADS IPMIVVTGVN RRDSLGKGLG LLHELPDQLG
LSQTISKHAE QVEDASALEG VMARVFGALQ GRPAPVHVEV PTDVMTLPAS ETVTIPDPEP
KAASDLTPIL DALARCESPV ILAGGGCRTQ NLALLKLAQR LDAPVVQTVN ARGLMHAHPL
TVPASPSLQS VRDLIAEADC VLALGTEMGP TDYDMYATGT YPEMSNLLRI DICDDQLSRH
EAACRLTGDL NEILPVLAEQ SPGKSNARGS ERAEKARLAA RAEIEALTPG YARFVSQIET
LRDACPDAIF VGDSTQAVYA ANLYYDHNRP GGWFNGATGF GALGYAIPAA IGAALADPSA
PVVALMGDGG AQFTLPELGV ARDENLPILF VVWNNNAFLE ISNAMEAAGI SPTGCHPSAP
DFEAAAAAYR LDFRRIAPEQ LQNALSEILP LNGPMLLEID MTG
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