| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3132 |
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| Symbol | |
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| ID | 4075004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 106447 |
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| End bp | 108480 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004635 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_611368 |
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| Protein GI | 99078110 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTGCG GCAGAAAGCA GCAAGGGACA AAGCGGAGCT CGGGCGCCGA CCTTTACACT
TTTGCGATCT CACTGCTTCT GTCCGTGCTG CCAGTTTCGA GCGCCGCTCA ATCTTCAGAC
GGCGTTGAGC CAGGCGTGGC CTTTCGCTCG GGATTGCGGG GGCCGGACGC GATTGAGCCC
TCTCAAGTCC ATCTGCCGAC CTCGGTCGGC GATGCGCTGG CGCTTCCGAC GTCACCCTTT
GCGTATGTGC TTTATGGTCT CTCCGCCATC GCTGTGTTGG CCATCGTTTT GGCCGAAGTC
CTGCGTCGGG TCAGGCGCAC ACGCGATACG GCGCAGGCAC AACCCGTCGC CCCCAAAGCC
CCTGAAACGC GCCCCAAAGG CGACAGCTTG GCGCTGTTGG ACGGGGAGGC GCGCGTTATT
GATGCCAATC GCCGGTTTGA ATACGAGGCC GGCATGCCGC TTGCGCAGAT CAGAGGCCGC
CCGATCTGGT CCATTCACGC CAAGGGGTTT GGCAAGTGTT TCTGGGACGG CGCGATACAA
GAGGCGCTGA CCGAGGGCGC TTGGCAGGGC GAGGCGCGCA CACTGAGCGA CGACCTCCAT
CCCGAGACGG AAACCCTGTC ACTGCGCGCG TTCAATGTGT CGGGGGCTGA TCCCACCTAC
GAATTTCGCT CGCGGCGTTC CTTTCGTCCC AAATCGGACC GTGCCGGTCT GCTCGACAGT
GGCCTTCGGG ATGCTCTGAC CGGGTTGCCG AGCCGTAGAG CGATGAAAAC ACAGGTGGAA
TTTGCAATCG TGCGCGCCAA GGCCGCAACG GCCGAGTTGG CGATCATTCT CATTGATCTC
GACCGGTTTC GGGACATCAA CTCGATCTTT GGCGACGACA TCGGGGATCG CGTGATCGAA
CGGCTTGCGG ATGCGGTGCG ATCTGTGATG CGTCCCGGGA TCACCATTGG CCGGATCGGA
GGTGATGAGT TCATCTTGCT GATCGAGCAG GCCTCAAGTC CCGAGGTGGT GCTGCAGGTG
GCCCATGACA TTGGTGCGGC GCTGGGGGAC GAGGTAGTCG TGGACGGGCT GACCTGCCGG
TTGAGCGCCA GCATGGGGAT CGCGCAATAC CCCAAGGACG GCAGCGATCA GCGCAACCTG
ATGCAGGCGG CGGGCGTGTC GCTGTGTCAT GCGAAGGCCA AAGGGCGCGG GCAGATCTGT
TTCTATTCTG AAAATATGGA GCAGCGCTCG GAAGAAAGCC TGCAGATGGA ACACGACCTG
AAGCGGGCCA TCTCTGATGG TGAGCTGCTG ATGTTCTATC AGCCTCAGAT CGACTTGCGC
ACAGGACAAT GTATCGGCGC CGAGGCGCTC TTGCGCTGGC AACACCCCAA GAAGGGCCTC
CTGTTGCCGG GAGGCTTTGT GCCTTTGGCG CTCGACACGG GCCTCACGAC GGCGATCGAT
CAGTTTGTGA CCGATGAGGT CTGTCGCCAG ATCCGTGCCT GGAATACGGA GGGTTATGCG
CCTGCAAAAA TCTCGGTGAA CATGTCTGCG ATGACGCTGC TGTCTCCGGA TTTTGCACGG
GATTTGCGGT CGACGGCACG GCATCATCAG GTGGATCTTA CTCAACTGGA GATCGAAGTG
CTGGAAACCA CTCTGTTTCC ACGCATGCGC AGCTCTCTCA ATACCGTGGA TGATCTGCGT
ACGATGGGGG TGAAGCTGGC CATTGATGAC TTTGGAACGG GGTATTCGTC GCTGGCGATG
CTGAAGGATT TGCCTATCGA CCGCATCAAG CTTGACCGGC GATTCATCAC CTCGCTACCT
GAGAACGTCA AAGACGATCG CATCGTTGCC GCTGTTGTGG CGATGGGGCG CAGCCTGGGT
GTGAGCGTAA TCGCCGAAGG CGTCGAGACG CGCGAGCAGC GGGACAGGTT GATCTCTTTG
GGATGTGCCG AAGCACAGGG ATACCTGTTC AGCCGACCCG TTCCTGCCGC GCAGTTTGCC
GAGACCTGGC TCCGATACGC GCGCCCCAAA CCATACGTCG GATCGGACGC CTGA
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| Protein sequence | MLCGRKQQGT KRSSGADLYT FAISLLLSVL PVSSAAQSSD GVEPGVAFRS GLRGPDAIEP
SQVHLPTSVG DALALPTSPF AYVLYGLSAI AVLAIVLAEV LRRVRRTRDT AQAQPVAPKA
PETRPKGDSL ALLDGEARVI DANRRFEYEA GMPLAQIRGR PIWSIHAKGF GKCFWDGAIQ
EALTEGAWQG EARTLSDDLH PETETLSLRA FNVSGADPTY EFRSRRSFRP KSDRAGLLDS
GLRDALTGLP SRRAMKTQVE FAIVRAKAAT AELAIILIDL DRFRDINSIF GDDIGDRVIE
RLADAVRSVM RPGITIGRIG GDEFILLIEQ ASSPEVVLQV AHDIGAALGD EVVVDGLTCR
LSASMGIAQY PKDGSDQRNL MQAAGVSLCH AKAKGRGQIC FYSENMEQRS EESLQMEHDL
KRAISDGELL MFYQPQIDLR TGQCIGAEAL LRWQHPKKGL LLPGGFVPLA LDTGLTTAID
QFVTDEVCRQ IRAWNTEGYA PAKISVNMSA MTLLSPDFAR DLRSTARHHQ VDLTQLEIEV
LETTLFPRMR SSLNTVDDLR TMGVKLAIDD FGTGYSSLAM LKDLPIDRIK LDRRFITSLP
ENVKDDRIVA AVVAMGRSLG VSVIAEGVET REQRDRLISL GCAEAQGYLF SRPVPAAQFA
ETWLRYARPK PYVGSDA
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