| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2954 |
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| Symbol | |
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| ID | 4077105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 3125010 |
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| End bp | 3125789 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638008283 |
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| Product | flagellar biosynthetic protein FliR |
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| Protein accession | YP_614948 |
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| Protein GI | 99082794 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.103295 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTCG TAGGCATAAC GCCAGAGCTC ATGGCCTTGT TTGGCGCGGG CTTCTGGCAC
GCCGCCATCG TGTTCCTGCG CATCGGGGCA ATGACCTCGA TCATGCTCGG GTTTGGCGAA
CAGCTGATCC CGACACAAAT TCGCCTCGTC GCCGGATTGG TGTTCACCGC AATCGTCGCG
CCGGCCCTTC CACAGATGCC GATGCCCCAA ACCGTCATGC AATATGCCGG GCTCATGGCG
ACAGAAGTTG TCGTTGGTCT GGCTCTTGGA CTTGGTTTGC GCATGTTCAT GCATATGCTG
CAAACGGCGG GATCGATTGC CGCGCAATGT ACCTCACTGA GCCAGGTTCT CGGTGGGGCA
GGTGCGGATC CGATGCCGGC TCTGGGGGCG GTGCTGTGGA TTTCGGGGAT TGCAGTGGCG
GTGATGCTCG ATTTTCACAT CCATGCAGCA CAATTGATGA TCCGTTCCTA CGACCTGTTT
CCCGTTGGTA TCTTTCCGAG CGCTTCTGGT CTCTCCGAAT GGGGAGTGCA TCGGGTCTCG
GCGACTTTTG CGCAGGCCTT TACACTGGCT GCGCCGTTCC TGATCACAGC CGTTGTGTAC
AACCTCACCT TGGGGGTCAT CAATCGCGCA ATGACGCAAC TAATGGTGGT ATTTGTCGGT
GCTCCCGTAA TCACATTTGG TGGTCTCGCG ATCCTGATGA TTGGTGCGCC GATGATGCTT
GAGGTCTGGG GGCACGGACT TTTGATGTTC TTTGCCGATC CCGGAGTTGG GATGCCATGA
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| Protein sequence | MNFVGITPEL MALFGAGFWH AAIVFLRIGA MTSIMLGFGE QLIPTQIRLV AGLVFTAIVA
PALPQMPMPQ TVMQYAGLMA TEVVVGLALG LGLRMFMHML QTAGSIAAQC TSLSQVLGGA
GADPMPALGA VLWISGIAVA VMLDFHIHAA QLMIRSYDLF PVGIFPSASG LSEWGVHRVS
ATFAQAFTLA APFLITAVVY NLTLGVINRA MTQLMVVFVG APVITFGGLA ILMIGAPMML
EVWGHGLLMF FADPGVGMP
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