| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2809 |
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| Symbol | |
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| ID | 4076577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2972936 |
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| End bp | 2973763 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638008135 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_614803 |
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| Protein GI | 99082649 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.241517 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCCGT TCATGAAGAT GCATGGGCTT GGAAATGACT TTGTCGTCAT CGATGCCCGC
GAGTCAGATA TCGAAATCAC CCCTGCAATG GCCAAGGGGA TTGCCCACCG CCAGATGGGT
CTCGGATTTG ACCAACTCGC CGTCATCGCT ACCGCTGACG CGTCTACAGA AGCGGATGCG
CATCTGGTGT TCTACAACGC TGACGGCTCT ACTTCAGGGG CCTGCGGGAA TGCGACACGC
TGTATCGCAA GGTACCTGAT GGATCAGAGC AACAAGCCGT CGCTGCGGTT GACAACCGAC
CGGGGTGTCC TGATTGCAAC GGACGCAGGT GAGGGGCTGA CCTCGGTGAA TATGGGTGCG
CCGCAGCTCA GTTGGGATGA AATCCCGCTC GCGGAGGAGT TGGAAACGCT AGAACTCCCC
ATCGAAGGCG CGCCAAGCGC CACTGGCATG GGCAACCCGC ATTGTACGTT CTTTGTTGAG
GACGCAGAGG TGATTCCACT GGCGGAATTT GGTCCTCGTT ACGAACATCA TCCCCTCTAT
CCGGAACGCA CCAATGTTCA GATCGCCCAT GTCGTCGGCC CGAACCATCT CAGGATGCGC
GTCTGGGAGC GCGGTGTTGG CATTACCCTT GCATCAGGCT CCTCCTCCTG CGCAACAGCG
GTAGCAGCCG CACGCAAGGG TCTCACAGGG CGCAAGGTAC AGATCGATCT GGATGGAGGG
ACGCTGTGGA TCGATTGGCG CGACGATGGG GTCTGGATGA CCGGACCAAC AATGCATGTC
GCCAATGGCA GCTTTACACG GCAATTCCTC GAAAGCTTGT CCGAATGA
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| Protein sequence | MLPFMKMHGL GNDFVVIDAR ESDIEITPAM AKGIAHRQMG LGFDQLAVIA TADASTEADA
HLVFYNADGS TSGACGNATR CIARYLMDQS NKPSLRLTTD RGVLIATDAG EGLTSVNMGA
PQLSWDEIPL AEELETLELP IEGAPSATGM GNPHCTFFVE DAEVIPLAEF GPRYEHHPLY
PERTNVQIAH VVGPNHLRMR VWERGVGITL ASGSSSCATA VAAARKGLTG RKVQIDLDGG
TLWIDWRDDG VWMTGPTMHV ANGSFTRQFL ESLSE
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