| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2734 |
|---|
| Symbol | |
|---|
| ID | 4077606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2877148 |
|---|
| End bp | 2878533 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638008059 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_614728 |
|---|
| Protein GI | 99082574 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0124674 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC CAATCCTGCT CCGGGGCTCT ATTCGCAGGC GGCTCATTAT CCAGTTGCTG
ACAGGGGCCG CGCTGTTGGC GGGGCTGATG TTTTTGGTGG TTCAGAACTA TGCGCGCGAC
CTCGCCGGGC AAAGTCAGGA TGAAATCCTT TCGGCGTCTG TGACCGCGAT TCTTGATTCG
GCATCGGTGC GCAACGGAGA TCTGACCGTC GACATCCCCT ATTTCGCCTT CTCCATGCTG
GGCAATATCA GCGAAGATCG CGTGTTCTAC GCCATCACGC GCAACGGCGC CTTTATGACG
GGATATTCCG ATCTCCCGCG CCCGGTCGCC AGCACCGGTC TCTCGCCGCG GTTTCAAACC
GCGCAATATG ATGGAGAGGA GATCCGCATG GCCACGGCCA CCCGGCGTCT TTCTGTAAGC
GGCACACCCG ATTTCATCGA AGTGACCGTC GCCCAGACAC GGTATGGTTT GCGACAGCAG
CTTGCTGGGA TTTCGCAAAC GGTGGCCGGG TTCGGCATTG GCTTTTTTGC GATTGCCGCC
TTCTTTGGCA TCCTCGCCGC CCAATCCGCG ATCCAGCCCC TGCGTGCGCT TGCCGGGGCT
GTGTCGCGCC GGGGGCTGTC GGACCTGCGT CCGGTTTCGG CTCCGGTGCC TGCCGAGATG
GAATCTCTTG TGGGCGCGCT CAATGGTTTC ATGAGCCGGC TCAAAACCTC TCTATCGCGC
TCGGAGGACC TGATCGCAGA GGCTGCACAT CGCGTCCGGA CCCCGCTTAC AACCGTACGC
ACACAGGCCG AGATCACCCT GCGGCGGGTC GACAAGCCCG AGAACCGCCA GGCCGTGCGC
GAGATGATCC GCGCCATTGA TGAGAGCAGC CGGGCCGCAG GGCAGCTTTT GGATCACGCC
ATGGTTTCCT TTCGCTCGGA CCACCTGGAG ATGGAAGACG TAGAGCTCAC ACGCCTTGCC
CGCGACGCTG TTTCGCGCCT GCACCCGATG GCAGAGCTGC GCGACATCGA CATAGAAATC
ACGCTGCCCG ATGCGCACAT GGTCGTCAAA GGCGACCCGA TCTTGATGCA GAGCGCGCTT
TTGAACCTTC TGGACAACGC CATCAAATAC GCGCCCCCCG ACAGCATCGT GCATGTCACC
GTTCGCCCCA CAGAGAGCGG CGCGGAGATC ACTGTGCGCG ACGAAGGCTC AGGCTTTCCA
AAGGCCGACA TGGGCCGGTT GACACGCCGC TTTGTGCGGG GCGGCAATAC CGAAACCGTT
GTGGGGTCTG GTCTCGGTCT CACGATTGCA AATGAGGTCG CCCGCGCCCA TGGCGGCCGC
CTGTTCCTGA CCAATCACAG CGACAAAGGT GGCGCATGCG CAAGCTTGTC TTTTCCCTTG
GCCTGA
|
|---|
| Protein sequence | MSTPILLRGS IRRRLIIQLL TGAALLAGLM FLVVQNYARD LAGQSQDEIL SASVTAILDS
ASVRNGDLTV DIPYFAFSML GNISEDRVFY AITRNGAFMT GYSDLPRPVA STGLSPRFQT
AQYDGEEIRM ATATRRLSVS GTPDFIEVTV AQTRYGLRQQ LAGISQTVAG FGIGFFAIAA
FFGILAAQSA IQPLRALAGA VSRRGLSDLR PVSAPVPAEM ESLVGALNGF MSRLKTSLSR
SEDLIAEAAH RVRTPLTTVR TQAEITLRRV DKPENRQAVR EMIRAIDESS RAAGQLLDHA
MVSFRSDHLE MEDVELTRLA RDAVSRLHPM AELRDIDIEI TLPDAHMVVK GDPILMQSAL
LNLLDNAIKY APPDSIVHVT VRPTESGAEI TVRDEGSGFP KADMGRLTRR FVRGGNTETV
VGSGLGLTIA NEVARAHGGR LFLTNHSDKG GACASLSFPL A
|
|---|
| |