Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2669 |
Symbol | |
ID | 4077580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2804811 |
End bp | 2805431 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638007993 |
Product | HAD family hydrolase |
Protein accession | YP_614663 |
Protein GI | 99082509 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCATCA CCGCCGTCGT CTTTGATATT GGTCGCGTTC TCATTGAGTG GGAACCGGAG CGCTTTTTTG ACCGTTTGAT CGGGGAGCCG CGCCGGCATG CGCTCTTTCA GGAGGTCGAT CTGCATGGGG CGAACCTCGA TGTGGACCGC GGCTATCCCT TTCGCGAAAC GATTTATGGG CTGGCGGACA AACACCCCGA CTGGGCCGCG GAGATCCGCC ATTGGCACGA CAGTTGGATC GAGATGGCCA GCCCCGAGAT CCCGCATTCC GTGCGCCTGT TGCGCGCGCT CAAGGCCAAG GGCGTGCCGG TCTATGCGCT GACGAATTTT GGCGCGGAGA CCTTTGTGAT CGCACAGACC CATTATCCGT TCCTGCGCGA GTTCGATCAG GCGTTTGTGT CGGCGCATCT GCGGTGCATC AAACCGGATG CGGAGATCTA TGCGCATCTG GAAGCGGGCA CCGGGCGACG CCCCGACGAG CTGCTGTTCA CCGATGACCG CCCTGAAAAC GTCACCGCTG CTGCCGTGCG CGGCTGGCAC ACCCATCTGT TCGATCGCCC CGAGACCTGG GCGGCGCGGT TGGTCGATGA GGGGCTGCTA ACTCAAGAGG AGGCACAATG A
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Protein sequence | MPITAVVFDI GRVLIEWEPE RFFDRLIGEP RRHALFQEVD LHGANLDVDR GYPFRETIYG LADKHPDWAA EIRHWHDSWI EMASPEIPHS VRLLRALKAK GVPVYALTNF GAETFVIAQT HYPFLREFDQ AFVSAHLRCI KPDAEIYAHL EAGTGRRPDE LLFTDDRPEN VTAAAVRGWH THLFDRPETW AARLVDEGLL TQEEAQ
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