Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2603 |
Symbol | |
ID | 4077514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2740131 |
End bp | 2741675 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638007927 |
Product | signal recognition particle subunit FFH/SRP54 (srp54) |
Protein accession | YP_614597 |
Protein GI | 99082443 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0541] Signal recognition particle GTPase |
TIGRFAM ID | [TIGR00959] signal recognition particle protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.44624 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00700873 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTTTGAAA ATCTATCCGA ACGCCTATCC GGTGTCTTCG ACCGGCTGAC AAAACAGGGC GCCCTCTCCG AGGACGACGT CAAAACCGCC CTGCGCGAAG TGCGCGTCGC CCTCTTGGAG GCCGACGTCT CGCTGCCCGT GGCCCGCGAT TTCGTCAAGA AGGTTCAGGA GCAGGCCACC GGTCAGGCCG TCACCAAATC GGTGACACCG GGCCAGCAGG TCGTGAAGAT CGTTCATGAT GCGCTTGTCG AGACCCTGCG AGGCGACGAG GACCCCGGGG CGCTCAAGAT CGACAACCCG CCCGCACCGA TCCTGATGGT CGGCCTGCAG GGCTCCGGCA AGACCACCAC CACCGGTAAG CTTGCAAAGC GCCTCAAGGA AAAAGAGGGC AAGAAAGTGC TTCTTGCCTC GCTCGACGTC TATCGCCCGG CAGCGATGGA TCAGCTGGCG GTGCTTGGTA CCCAGATCGG CGTCGACACC CTGCCCATCG TCAAAGGCCA AAGCCCGGTC GACATCGCCA AACGCGCCAA ACAGCAGGCC GCGCTTGGGG GCTATGACGT CTATATGCTC GACACGGCCG GTCGTCTGCA AATCGACGAG ACCCTCATGA AAGAGGTCGA AGACGTCCGC GACGTGGTCT CCCCGCGCGA GACGCTTCTG GTGGTAGATG GTCTGACCGG TCAGGTTGCG GTCGAGGTCG CGGAAGAATT CGACAACAAG ATCGGCATCT CCGGCGTCGT GCTGACCCGG ATGGACGGCG ACGGGCGCGG CGGTGCGGCG CTCTCGATGC GCGCCGTGAC CGGCAAGCCC ATCCGCTTTG TCGGCCTTGG CGAGAAGATG GACGCCATCG AGACCTTCGA GCCGGACCGG ATCGCAGGCC GCATCCTTGG CATGGGCGAC ATTGTGGCCC TCGTCGAGAA GGCGCAGGAA ACCATCGAGG CTGAGCAGGC CGAGCGCATG ATGAAGCGCA TGATGAAAGG TCAGTTCAAT ATGAACGACC TGCGCATGCA GTTGGAGCAG ATGCAGCAGA TGGGCGGCAT GCAGGGCATG ATGCAGATGA TGCCGGGCAT GGGCAAAATG GCCAAACAGG TCGAAGAGTC CGGCTTTGAC GACAAGATGG TCAAGCGCCA GATCGCGATG ATCCAGTCCA TGACCAAGAA AGAGCGCGCA AACCCCGCGC TGCTGCAGGC CAGCCGCAAG AAACGCATTG CAGCAGGCTC CGGCATGGAG GTCTCGGACC TCAACAAGCT CTTGAAGATG CACCGCCAGA TGGCGGACGT CATGAAGAAG ATGGGCAAAA TGGGCAAAGG CAAGATGCTG AAACAGGCCA TGAAAGGCAT GTTCGGCAAA GGCGGCATGC CCGAGATGCC CGGTGGCATG CCCGGCGGTA TGGATCCCTC GCAGATGGAC CCCAAGGCGC TCGAGGCCGC AGCCAAGGCC ATGGGCGGCA AGGGTGGTTT GCCCGGCGGT CTCGGCGGGC TGGGTGGCCT CGGTGGCGGC ATGGGCCTGC CCGGTGGCCT CTCTGGATTT GGCAAGAAGA AGTAA
|
Protein sequence | MFENLSERLS GVFDRLTKQG ALSEDDVKTA LREVRVALLE ADVSLPVARD FVKKVQEQAT GQAVTKSVTP GQQVVKIVHD ALVETLRGDE DPGALKIDNP PAPILMVGLQ GSGKTTTTGK LAKRLKEKEG KKVLLASLDV YRPAAMDQLA VLGTQIGVDT LPIVKGQSPV DIAKRAKQQA ALGGYDVYML DTAGRLQIDE TLMKEVEDVR DVVSPRETLL VVDGLTGQVA VEVAEEFDNK IGISGVVLTR MDGDGRGGAA LSMRAVTGKP IRFVGLGEKM DAIETFEPDR IAGRILGMGD IVALVEKAQE TIEAEQAERM MKRMMKGQFN MNDLRMQLEQ MQQMGGMQGM MQMMPGMGKM AKQVEESGFD DKMVKRQIAM IQSMTKKERA NPALLQASRK KRIAAGSGME VSDLNKLLKM HRQMADVMKK MGKMGKGKML KQAMKGMFGK GGMPEMPGGM PGGMDPSQMD PKALEAAAKA MGGKGGLPGG LGGLGGLGGG MGLPGGLSGF GKKK
|
| |