| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2478 |
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| Symbol | |
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| ID | 4076843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2616801 |
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| End bp | 2618123 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007802 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_614472 |
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| Protein GI | 99082318 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0599642 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGACC CAATGACTGA GACAGCGCAC AAAAGCTGGT CCGTACGCGG AGCCCTGATC
GCGGGCGCGT TGGGTGTGAT CATTCTGCTT GGCGGCTTTG GTACCTGGGC GGTTTTTTCC
AATATCGCCG GGGCGGTTGT CGCCTCTGGC CAGATCGAAG TGGATCGCAA TCGTCAGGTT
GTGCAGCACA TCGATGGCGG AGTCGTGGAA GACATTCTTG TGGACGAAGG CGATCTGGTC
ACCGCTGGCC AGACCTTGGT TCGTCTTGAC GCGGTGGACC TGCGCTCGCA GCTTACGATT
ACCGAAGGAC AGTTGTTTGA GATGATGGCC CGCCGAGGCA GGCTCGAGGC CGAGCGCGAT
GAGGTGGACA CCATCAGCTT TGATGCAGAA CTCCTGACGC TGGCGCAGCA ACGCCCCGAA
GTGGCTGAAC TCGTCGAAGG GCAAGCCCGC CTGTTTCGCG CCCGACGCGA GTCGGTGCGC
CGCGAGGTGG AGCAACTTGA AAAGCGCGCG GTCCAGATCG AGGATCAGAT CACTGGCGTG
CGCGCCCAGC AGGAGGCCAC ACGAGAACAG CTGGTTCTGA TCAAAGAAGA GCTCAGCAAC
CAGCAGTCCC TGCTGGATCG AGGTCTTGCG CAGGCGTCGG TGGTGCTGAA CCTCCGGCGC
AATCAGGCCA ACCTGCAAGG GACGCTGGGC GAGTTGATTG CGAGTGAGGC GCAGGCACGC
GGTCGCATCA CCGAGATCGA AATCGAGGCG CTGAAGCTCC GTAATCAGCG CCGCGAGGAG
GCCATCACCC GCCTGCGCGA CCTGCGCTAC AGAGAGCTCG AGTTGATTGA AACGCGCCGT
TCTCTGATTG ATCGACTGGG CCGTCTGGAC ATTACCGCGC CTGTTTCGGG CGTGGTCTAT
GGGATGAGTG TGCGCACCCC ACGTTCCGTC ATCCGGCCCG CCGACCCTGT ACTCTATCTG
GTGCCGCAGG ACCGACCCCT GGTGATCGCT GCGCGGGTTG CGCCGACGGA TATTGACCAG
ATCCATGTCG GCCAGGCGGT CTCGATCAGA TTGCCCGCGC TGGATCAGCG CCAAACGCCG
GAGCTGTTTG GATCGGTGAC GCTGTTTTCG GCGGATGCTT TCCAGGACGA AACCACCGGG
GCCTCCTACT ATCGCGCCGA GATCGAGTTG AATGCGGGCG AAATGGATCG GCTCCCGGAG
GGCACGGTTC TCATCCCGGG GATGCCGGTC GAAAGCTTTA TCCGCACTGC TGATCGCTCG
CCATTGGCCT ATCTTGTAAA ACCACTTTCG GACTATTTCG TACGCGCGTT CCGCGAAAGT
TGA
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| Protein sequence | MIDPMTETAH KSWSVRGALI AGALGVIILL GGFGTWAVFS NIAGAVVASG QIEVDRNRQV
VQHIDGGVVE DILVDEGDLV TAGQTLVRLD AVDLRSQLTI TEGQLFEMMA RRGRLEAERD
EVDTISFDAE LLTLAQQRPE VAELVEGQAR LFRARRESVR REVEQLEKRA VQIEDQITGV
RAQQEATREQ LVLIKEELSN QQSLLDRGLA QASVVLNLRR NQANLQGTLG ELIASEAQAR
GRITEIEIEA LKLRNQRREE AITRLRDLRY RELELIETRR SLIDRLGRLD ITAPVSGVVY
GMSVRTPRSV IRPADPVLYL VPQDRPLVIA ARVAPTDIDQ IHVGQAVSIR LPALDQRQTP
ELFGSVTLFS ADAFQDETTG ASYYRAEIEL NAGEMDRLPE GTVLIPGMPV ESFIRTADRS
PLAYLVKPLS DYFVRAFRES
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