| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2451 |
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| Symbol | |
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| ID | 4076933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2592128 |
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| End bp | 2592871 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638007775 |
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| Product | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III |
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| Protein accession | YP_614445 |
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| Protein GI | 99082291 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0177] Predicted EndoIII-related endonuclease |
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| TIGRFAM ID | [TIGR01083] endonuclease III |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.452204 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.144793 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAGCG CGTCTTTTGC ATCGCAATGC GCCGCCCGCG GCAAATGCTT TGCGTTTTTA
ATTTGCGCCC CCGTTCCGCA GCGGGCAAAA GAAGCCCCGA TGGCCAAGCA ACTCGATTAT
CATACGCTCC GCGAGATCTT TACGCGGTTC CAGGACGCCG AGGCCGAACC CAAGGGCGAA
CTCGACCATG TCAACGTCTA CACGTTGGTG GTGGCCGTGG CTTTGTCCGC TCAGGCCACG
GATGCTGGCG TGAACAAAGC CACCAAGGAT TTGTTCAAGA TTGCCGATAC ACCCCAAAAG
ATGCTCGACC TCGGCGAGGA GGGTGTGATC GAACACATCA AGACGATTGG CCTTTATCGT
AACAAGGCCA AGAACGTCAT CAAGCTATCG CGCATTCTCG TCGACGAATA CGGCGGCGAA
GTTCCTTGTT CGCGCGCCTC ACTGGAGAGC CTACCGGGGG TCGGGCGCAA GACCGCAAAT
GTGGTTTTGA ACATGTGGTG GCGGTACCCG GCACAGGCAG TGGACACCCA TATCTTTCGC
GTCGGCAACC GGTCGGGCAT CTGTCCGGGC AAGGATGTAA ACGCGGTCGA GCGCGCAATC
GAAGACAATA TCCCGGTCGA CTTCCAGCTG CATGCACATC ACTGGCTGAT CCTGCATGGC
CGTTATCATT GCAAGGCGCG CAAACCTCTG TGTGCGACCT GCATCATCCG TGACCTCTGC
CTCTACGAGG AAAAAACACT ATGA
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| Protein sequence | MVSASFASQC AARGKCFAFL ICAPVPQRAK EAPMAKQLDY HTLREIFTRF QDAEAEPKGE
LDHVNVYTLV VAVALSAQAT DAGVNKATKD LFKIADTPQK MLDLGEEGVI EHIKTIGLYR
NKAKNVIKLS RILVDEYGGE VPCSRASLES LPGVGRKTAN VVLNMWWRYP AQAVDTHIFR
VGNRSGICPG KDVNAVERAI EDNIPVDFQL HAHHWLILHG RYHCKARKPL CATCIIRDLC
LYEEKTL
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