| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2341 |
|---|
| Symbol | |
|---|
| ID | 4078331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2463043 |
|---|
| End bp | 2463669 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638007663 |
|---|
| Product | butyryl-CoA:acetate CoA transferase |
|---|
| Protein accession | YP_614335 |
|---|
| Protein GI | 99082181 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
|---|
| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTGGG ACCGCAACCA AATGGCCGCG CGCGCGGCAC AGGAACTCGA AGACGGCATG
TATGTAAACC TCGGCATCGG GATTCCGACG CTGGTCGCCA ACTACGTGGG TGACAAGGAC
ATCACGTTGC AGTCGGAGAA CGGCATGCTC GGCATGGGCC CTTTCCCCTT TGAGGGCGAA
GAAGACCCCG ACCTGATCAA TGCAGGTAAG CAAACCATCA CCGAATTGCG CCGCACGGCC
TATTTCGACA GTGCCACCTC CTTTGGCATG ATCCGCGGCG GCAAGATCGC GGCCGCGATC
CTCGGCGCGA TGGAAGTCGC AGAGAACGGT GACCTGGCCA ACTGGATGAT CCCGGGCAAA
CTGGTCAAAG GTATGGGCGG CGCGATGGAT CTGGTCGCCG GTGTCGGGCG TGTCATCGTG
GTCATGGATC ACGCCAACAA GCACGGCGAA TCCAAGCTCC TGAAAGAATG CACCTTGCCG
CTGACGGGCA AAGGCGTCGT GGACCGCATC ATCACCAATC TTGGCGTGTT GGATGTTGTC
GAGGGTGGTC TCAAAATCGT CGAGGTTGCC GAAGGCGTGA CCGAAGACGA GCTGCGGGCT
GCAACCGAGG CAACCATCGT CAACTGA
|
|---|
| Protein sequence | MAWDRNQMAA RAAQELEDGM YVNLGIGIPT LVANYVGDKD ITLQSENGML GMGPFPFEGE
EDPDLINAGK QTITELRRTA YFDSATSFGM IRGGKIAAAI LGAMEVAENG DLANWMIPGK
LVKGMGGAMD LVAGVGRVIV VMDHANKHGE SKLLKECTLP LTGKGVVDRI ITNLGVLDVV
EGGLKIVEVA EGVTEDELRA ATEATIVN
|
|---|
| |