Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2259 |
Symbol | |
ID | 4077326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2373550 |
End bp | 2375034 |
Gene Length | 1485 bp |
Protein Length | 494 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638007581 |
Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
Protein accession | YP_614253 |
Protein GI | 99082099 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTCAC GTCGTCACTT TCTCAGCACC GCCCTCGCGG GGCTTGCCGC GGCCCCCGCG CTGGCCAATG CCCCCGGCTA CACCCCTCGC CCCAAGGCCC GCGGGCTCAG CCCCTATACC CCCGGCGCAG ATGGTCTCGA CGCGATCCTG CGTGGCGCGG GGCTCTCAGG GCAGAGCACC TGCGTAGTCG CCAACGCGCG CACCGGTCAG GTCCTCGAAA GTGTGGAGGG CGACGCGCTT TTACCCCCTG CCAGCGTGGC AAAAGTTCTC ACGGCGCTTT ACGCGCTCGA CTCGCTTGGT GCTGGCTACC GGTTTCGAAC CCGCCTGGTG GCCACTGGCC CGCTCAAGAA CGGGATCATT CAGGGCGATC TTGTGCTGGT TGGCGGCGCC GATCCAACGC TCGACACGGA TGGGCTTGCC AATCTCGCCG GCCAAATGAA GACGGCGGGC GTGCGGGGCG TCACTGGCCG CCTGCTGATC TGGGAGGATA TGCTTCCCTA TATCCGGTCG ATCGACCCGG ACCAGCCCGA TCATATCGGC TACAGCCCTT CTGTGAGTGG CATCGCGCTG AACTTCAACC GGGTTCATTT TGAATGGAAG CGCGCGGGCA ACAACTGGGC CATCACGATG GATGCCCGCA CACAAAAGTA CCGCCCCGAC GTCTATACCT CGAAAATGGC CGTCGCGCGG CGCGATCTGC CAGTCTACAG CTATGAGAAC AAGGCGGGCA TCGATCATTG GACCGTCGCC AGCGGCGCCC TCGGCAATGG GGGCGCGCGG TGGTTGCCGG TGCGCAATCC CGCGCTCTAT GCCGGGGATG TGTTCCAGAC CCTCGCTCGT GCCAACGGGA TCGCCTTGCC GAGCCCAAAG ACCACCGCGA CCCTGCCCGG CGGCACCGTG GTCGCCCAGA TCCAGAGCGC GCCGCTGCCG GACCTGCTGC GCGCCATGCT CAAATACTCC AACAACCTGA TGGCCGAAAT GATCGGCATG ACGGCCTCCC TGCAGCGCGG CGCCCGCCCC TCAAGCCTCA AGTCCTCGGG GCAGAGAATG AGCGACTGGG CGCGCAGCGC CCTCGGCATG CAGCACTGCA AGATGGTGGA CCACTCGGGC CTTGGCGAAG AATCCCGTCT CAGCGCCAAT GACATGGTGC GCGCGCTGCT TGCGTCACGC CGCACCGGTG CGCTGAAACC ACTGCTCAAG CCCTACTATT TCAACGATGC CAAGGGCCGC CCGATCAAAA CCCACCCTGT GAAGATCGCG GCCAAAACCG GCACGCTCAA TTTTGTCTCG GGGCTTGGCG GATTTATCAA CACGCCCGAT GGCGGCGAGC TTGTCTTTGC AATCTTCAGC GCCGACCAGC GCGCCCGCGC CAAGATCAGC CGTGCCGAAC GTGAACGCCC GCGCGGAGGG CGCAGCTGGA ACACACGCGC AAAGAAGCTA CAGCAAAACC TGCTGGACCG GTGGGGACAG GTCTACGGCT CCTGA
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Protein sequence | MISRRHFLST ALAGLAAAPA LANAPGYTPR PKARGLSPYT PGADGLDAIL RGAGLSGQST CVVANARTGQ VLESVEGDAL LPPASVAKVL TALYALDSLG AGYRFRTRLV ATGPLKNGII QGDLVLVGGA DPTLDTDGLA NLAGQMKTAG VRGVTGRLLI WEDMLPYIRS IDPDQPDHIG YSPSVSGIAL NFNRVHFEWK RAGNNWAITM DARTQKYRPD VYTSKMAVAR RDLPVYSYEN KAGIDHWTVA SGALGNGGAR WLPVRNPALY AGDVFQTLAR ANGIALPSPK TTATLPGGTV VAQIQSAPLP DLLRAMLKYS NNLMAEMIGM TASLQRGARP SSLKSSGQRM SDWARSALGM QHCKMVDHSG LGEESRLSAN DMVRALLASR RTGALKPLLK PYYFNDAKGR PIKTHPVKIA AKTGTLNFVS GLGGFINTPD GGELVFAIFS ADQRARAKIS RAERERPRGG RSWNTRAKKL QQNLLDRWGQ VYGS
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