| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1928 |
|---|
| Symbol | |
|---|
| ID | 4076879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2027532 |
|---|
| End bp | 2028440 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638007244 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_613923 |
|---|
| Protein GI | 99081769 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.837746 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAGC GGTTTGGCGG CAAATACAGC CCCTCTGGTC AAGATGGCGC ACGCCCCGAC
GGACGCCCGA CCAGCTCTTC TCGTATGACG GCGACCGCGC GGGTGAACCC TGTGGGGCTC
CGCGCCAATC TGATGTTTGT GCCTGCGGCC GTGATGATGC TCTTCTCGCT GGCCTCGGGC
GCCGCCGGTC TGGTGCTGGG CTTGATCAGT GCAGGGCTCT GGGCGGCAAG CGCCGTGATG
CTGCGCGAGG GCCTGAAGGC CGAAGCCGCC TATGACGACC GCAAAGTGGC GCGCCGCCCT
GCCCTGCCGC GCAAGATCCT TGCCGCCAGC CTCTGCGGTC TGGGCGGCGC GGTCGGCGCG
TGGTCCAGCG AGCCGGGCGT GATCACTGCT GCGCTTTATG GCGTCGCCTG CGTTGGGCTG
CATCTTGCGG CTTTTGGCCT TGATCCCCTC AGCGACAAAG GCGTCGAAGG CATTGATGAC
TTCCAAAGCG CCCGCGTCGC GCGCGTGGTC GATGAGGCCG AAACCCATCT GGCCGCCATG
AAAGACGCCG TACTGCGCGC CAAAGACCGC TCGGTCGAGC TGCGCGTGGA CCAGTTTCAG
GCGGTCGCAC GCGATCTGTG CCGCACTGTC GAAGAAGACC CCCGCGACCT GACCGCTGCG
CGCAAGTACC TCACCGTCTA CTTGCTCGGA GCGCGGGATG CGACGATCAA ATTTGCCGAT
ATCTTTGCCC GCAGCGGCAG CACCGAGGCG CGCGCCGACT ACCTCGCGCT GCTCGACGAT
CTGGAACAGA ATTTCGCCGC CCGGAATGAA AAACTCCTGC TGGAGGACCG GGGCGATCTG
AATATTGAAA TTGATGTGTT GCGCGCCCGG CTGGAGCGCG AAGGCGTCCA GTTGGACCGC
CCCTCTTAA
|
|---|
| Protein sequence | MAQRFGGKYS PSGQDGARPD GRPTSSSRMT ATARVNPVGL RANLMFVPAA VMMLFSLASG
AAGLVLGLIS AGLWAASAVM LREGLKAEAA YDDRKVARRP ALPRKILAAS LCGLGGAVGA
WSSEPGVITA ALYGVACVGL HLAAFGLDPL SDKGVEGIDD FQSARVARVV DEAETHLAAM
KDAVLRAKDR SVELRVDQFQ AVARDLCRTV EEDPRDLTAA RKYLTVYLLG ARDATIKFAD
IFARSGSTEA RADYLALLDD LEQNFAARNE KLLLEDRGDL NIEIDVLRAR LEREGVQLDR
PS
|
|---|
| |