| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1878 |
|---|
| Symbol | |
|---|
| ID | 4077375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1976745 |
|---|
| End bp | 1977938 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638007194 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_613873 |
|---|
| Protein GI | 99081719 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.998766 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACACGCA GCACCCCACC GACCATCTGG ACCCTGATCC TGCTCTCCGG CCTCTCTGCC
CTTGGCATGA ACATCTTTCA GCCGTCCCTG CCTGGTATGG CGGCCTATTT TGGGGTCGAG
TATCGCCTGA TCGCGCTTTC GGTGCCGTTT TACCTGGCCG CAAGCACGGT GATCCAGATC
GTTGTCGGGC CGATTTCGGA CAAGATGGGC CGCCGTCCGG TGATGATGGT CTCCTTGCTG
CTGTTTCTGC TGGCCACGCT GGGCTGTATT TTTGCAACCA CGGCCGAGGT GTTTCTCGCT
TTTCGGATGG CGCAGGCGGT GGTGGCCACC TGTATGGTAT TGAGCCGCGC CGCGGTGCGC
GACATGTATG AAGGGCCCAA GGCCGCGAGC ATGATCGGCT ATGTCACCAT GGGGATGACG
GTGGTACCGA TGGTGGGTCC GGCACTTGGC GGGATCTTGG ATCAGGCCTT TGGCTGGCAC
GCAAACTTCT GGCTGCTCTT TGCCACCGCG GCGGTGACGC TGGTGATTTT CTACGCCGAT
TTCGGCGAGA CCGCGACGGC GAGCGGCAAG CCGTTGATCG CACAGTTTCG CGAATACCCA
GCACTGCTGC GCTCGCCCCG CTTCTGGGGC TACTCGCTCG CGGCGGGCCT GTCGTCAGGT
AGCTTCTTTG CCTACCTCGG CGGCAGCCCT TTTGTGGGCA CCAATGTCTA TGGGCTCAAC
AGTGCAGAAC TCGGGATCTA TTTCTCCGCG CCTGCGGTGG GCTATTTCCT CGGCAATTTC
CTCTCCGGAC GGTACTCGGA GCGCTTTGGC ATCAACACGA TGGTGTTCTG GGGCGCGATC
GTGAACATCT TTGGCGTCGG GCTTTCGCTC AGCATTACGC TTGCGGGCAT GGACACGGTG
TGGACCTTCT TTGGACTGAT GTGTTTTGTC GGCCTTGGCA ACGGCATGGC GATCCCCAAT
GGCACCACCG GTGCGATCAG CGTCCGCCCG CATCTGGCCG GCACAGCGGC GGGACTGTCC
TCGGCGATCA TGATCGGCGC CGGTGCGGCG CTGTCGGCCA CGGCCAGCTG GCTCCTGGTG
CCCGGCTCCA ATGCCGCACC TCTGCTTGAG ATCATGTTTG CCAGCGGTTG CCTTGGGTTG
GTGGCCATTC TTTACGTGAT GCGGCGCGAA CGCCAGCTTG GGCTTGCGGC CTGA
|
|---|
| Protein sequence | MTRSTPPTIW TLILLSGLSA LGMNIFQPSL PGMAAYFGVE YRLIALSVPF YLAASTVIQI
VVGPISDKMG RRPVMMVSLL LFLLATLGCI FATTAEVFLA FRMAQAVVAT CMVLSRAAVR
DMYEGPKAAS MIGYVTMGMT VVPMVGPALG GILDQAFGWH ANFWLLFATA AVTLVIFYAD
FGETATASGK PLIAQFREYP ALLRSPRFWG YSLAAGLSSG SFFAYLGGSP FVGTNVYGLN
SAELGIYFSA PAVGYFLGNF LSGRYSERFG INTMVFWGAI VNIFGVGLSL SITLAGMDTV
WTFFGLMCFV GLGNGMAIPN GTTGAISVRP HLAGTAAGLS SAIMIGAGAA LSATASWLLV
PGSNAAPLLE IMFASGCLGL VAILYVMRRE RQLGLAA
|
|---|
| |