| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1869 |
|---|
| Symbol | |
|---|
| ID | 4077894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1969271 |
|---|
| End bp | 1971301 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638007185 |
|---|
| Product | carbamoyl-phosphate synthase L chain, ATP-binding |
|---|
| Protein accession | YP_613864 |
|---|
| Protein GI | 99081710 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAGA AGATCCTGAT CGCCAACCGG GGGGAAATTG CCTGTCGCGT CATCAAGACC
GCGCGCAAGA TGGGCATCAA GACCGTCGCC ATTTATTCCG ACGCCGACCG TCAGGCGCTG
CATGTGCAGA TGGCGGATGA GGCCGTGCAT GTGGGCCCTG CGCCTGCCAA CCAATCCTAC
ATCGTCATCG ACAATGTGAT GGCCGCGATC AAATCCTCGG GCGCGCAGGC GGTGCATCCG
GGCTATGGCT TCCTGTCGGA AAACGCCAAA TTCGCCGAGG CGCTGGAGGC CGCAGGCGTC
GCCTTTGTTG GCCCGCCCAA AGGCGCGATT GAGGCGATGG GGGACAAGAT CACCTCGAAG
AAAATCGCCC AGGAAGCAGG CGTGTCGACC GTGCCCGGCT ACATGGGCCT GATCGCGGAC
GCCGATGAGG CGGTGAAGAT CTCCAACGAG ATCGGCTATC CGGTGATGAT CAAGGCCTCT
GCCGGGGGCG GCGGCAAGGG CATGCGGATT GCCTGGACCG ACGAAGAGGC CCGCGAGGGC
TTTCAGTCCT CCAAAAACGA GGCCGCGAAC TCCTTTGGCG ATGACCGGAT CTTCATTGAG
AAATTCGTGA CGCAACCGCG CCACATCGAA ATTCAGGTGC TCTGCGATGC CCATGGCAAC
GGCGTTTACT TGGGCGAGCG CGAATGCTCC ATCCAGCGCC GCAACCAGAA GGTCGTCGAA
GAGGCGCCGA GCCCCTTCCT CGATGAAGAG ACCCGCCGCG CCATGGGCGA GCAATCCGTC
GCGCTGGCCA AGGCCGTGGG CTATGCCTCT GCGGGCACCG TGGAATTCAT CGTCGACGGC
GACAAGAACT TCTACTTCCT CGAGATGAAC ACCCGCCTGC AGGTGGAACA TCCCGTGACC
GAACTCATCA CTGGTGTGGA CCTTGTGGAG CAGATGATCC GCGTGGCCGC CGGCAAGGAG
CTGTCGATCA CTCAGAATGA TGTCAAACTT ACCGGCTGGG CGATTGAAAA CCGCCTTTAT
GCCGAAGATC CCTATCGCAA CTTCCTGCCC TCCATCGGGC GTCTCACCCG CTATCGTCCC
CCGGCAGAAA CCGCGGCCTA CACGCCCGGC GTCGCGCCCG GAGATGCGGG CGATGTGGTC
GTGCGTAACG ACACCGGCGT CTATGAAGGC GGTGAGATTT CAATGTATTA CGACCCGATG
ATCGCCAAGC TCTGCACCTG GGCACCGACC CGTGATGCGG CGATCGAGGC GATGCGCGCG
GCGCTTGACA GTTTCGAGGT CGAAGGCATC GGTCACAACC TGCCGTTCCT TTCGGCGGTG
ATGGATCATC CGAAGTTTGT TTCGGGCGAG ATGACCACCG CCTTTATCGC CGAGGAATAC
CCCGAGGGGT TTGACGGCGT CGATCTGCCG GAAAGCGATC TGAAGCGCAT CGCGGCCTCT
TGTGCGGCCA TGCACCGGGT TGCCGAAATC CGCCGCACGC AGGTCTCGGG CCGCATGGAC
AACCACGAAC GCCGGGTGGG CAACACCTGG GTGGTGGCCA TTGGCGGGCA GACCTATGAG
CTGCGTGTTG CCGCCGATCC CGAAGGCGCA ACCGTGCGCT TTGAGGATCA AAGCGAGATC
CGCGTGAGTT CCGATTGGAC GCCGGGTGAC AGCCTTGCCC ATGTGGATGC GGATGGCACG
CCTCTGGTGC TGAAGGTCGA CAAGATCACC CAAGGCTTCC GCGTGCGCAG CCGGGGCGCG
GACCTCAAGG TGCATGTGCG CCGTCCGCGT CAGGCCGAAC TGGCCGCCTT GATGCCCGAA
AAACTGCCGC CCGATACCTC CAAGATGCTT CTGTGCCCAA TGCCCGGTCT TGTTGTGAAG
ATCAACGTCG AGGTGGGCGA AGAAGTGCAG GAGGGGCAGG CGCTCTGCAC CATCGAGGCG
ATGAAGATGG AAAACATCCT GCGCGCCGAG AAAAAATCCG TGGTCTCCAA AATCAATGCG
GCGGCAGGCG ACAGCCTCGC GGTGGACGAT GTGATCATCG AATTCGAATG A
|
|---|
| Protein sequence | MFEKILIANR GEIACRVIKT ARKMGIKTVA IYSDADRQAL HVQMADEAVH VGPAPANQSY
IVIDNVMAAI KSSGAQAVHP GYGFLSENAK FAEALEAAGV AFVGPPKGAI EAMGDKITSK
KIAQEAGVST VPGYMGLIAD ADEAVKISNE IGYPVMIKAS AGGGGKGMRI AWTDEEAREG
FQSSKNEAAN SFGDDRIFIE KFVTQPRHIE IQVLCDAHGN GVYLGERECS IQRRNQKVVE
EAPSPFLDEE TRRAMGEQSV ALAKAVGYAS AGTVEFIVDG DKNFYFLEMN TRLQVEHPVT
ELITGVDLVE QMIRVAAGKE LSITQNDVKL TGWAIENRLY AEDPYRNFLP SIGRLTRYRP
PAETAAYTPG VAPGDAGDVV VRNDTGVYEG GEISMYYDPM IAKLCTWAPT RDAAIEAMRA
ALDSFEVEGI GHNLPFLSAV MDHPKFVSGE MTTAFIAEEY PEGFDGVDLP ESDLKRIAAS
CAAMHRVAEI RRTQVSGRMD NHERRVGNTW VVAIGGQTYE LRVAADPEGA TVRFEDQSEI
RVSSDWTPGD SLAHVDADGT PLVLKVDKIT QGFRVRSRGA DLKVHVRRPR QAELAALMPE
KLPPDTSKML LCPMPGLVVK INVEVGEEVQ EGQALCTIEA MKMENILRAE KKSVVSKINA
AAGDSLAVDD VIIEFE
|
|---|
| |