Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1822 |
Symbol | |
ID | 4076968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1916613 |
End bp | 1917428 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638007137 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_613817 |
Protein GI | 99081663 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.112929 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.720106 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGAATA TCCCCGTATC CGCTCTGATC GGGCTGTTTT TCACGGCCCT CTACTTTCTC GGCGCACTTT TTGCGCCGCT CCTGGCCCCC TATGGCATGG CCGAAGTGGT CGGCGACGTT TGGGAACCCT CCAGCGCCGA CTACTGGCTG GGCACCGACA ATATCGGACG CGATCTGTTG TCGCGGATGA TCTATGGCGG GCGCACCACC ATCTTCATCG CCACCATGGC GACGCTGATC TCCTTCACCA CCGGATCCAT CCTCGGGATC TTTGCAGCCG TCTCCGGCGG GTGGATCGAC CAGACACTGT CGCGCTTTGT CGATCTCATC ATGTCGATCC CGACACTGAT CTTTGCGCTT GTTGTGCTCT CGGTGACGCC TGTGACCGTG CCGATGCTGA TCCTCGTGAT GGGTCTTTTG GACTCCACAC GCGTGTTCCG CCTCGCCCGC GCCGTTGCTG TCGACATCGA GGTGATGGAC TTTGTGGAAG CCGCACGCCT GCGCGGTGAG AAGACCGCGT GGATCATCTT CCGCGAGATC CTGCCCAATG CGCTGTCGCC ACTGGTGGCA GAGATGGGGC TGCGCTTCAT CTTTATGGTG CTCTTTGTGT CCACCCTCTC CTTCCTGGGT CTGGGCGTGC AGCCCCCCGA GGCTGATTGG GGCGGCATCG TGAAGGAAAA CAAGGACGGT ATCGTCTATG GCGTGCCCGC CGCGCTGATC CCCGCCTTTG CCATCGCAAC CCTTGCGATC TCGGTGAACC TGGTGGCGGA CTGGATCCTG AACCGTACCA CATCGCTGAA AGGAGGCCGG GGATGA
|
Protein sequence | MKNIPVSALI GLFFTALYFL GALFAPLLAP YGMAEVVGDV WEPSSADYWL GTDNIGRDLL SRMIYGGRTT IFIATMATLI SFTTGSILGI FAAVSGGWID QTLSRFVDLI MSIPTLIFAL VVLSVTPVTV PMLILVMGLL DSTRVFRLAR AVAVDIEVMD FVEAARLRGE KTAWIIFREI LPNALSPLVA EMGLRFIFMV LFVSTLSFLG LGVQPPEADW GGIVKENKDG IVYGVPAALI PAFAIATLAI SVNLVADWIL NRTTSLKGGR G
|
| |