Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1604 |
Symbol | |
ID | 4077706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1714865 |
End bp | 1715674 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638006917 |
Product | hypothetical protein |
Protein accession | YP_613599 |
Protein GI | 99081445 |
COG category | [R] General function prediction only |
COG ID | [COG3926] Putative secretion activating protein |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000491659 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.639423 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAAGA ACTTCGACCG AAGCCTTGAT TGGGTTCTGG CCCATGAAGG CGGTTATGTG AACCACCCCA AGGATCCGGG GGGAGCAACG AATATGGGCG TCACCCAGCG CACATATGAT GCCGATCTGC GGCGTCGTCA GCTGTCATCT CGCAGCGTGA AACTGATCAC CATGGAAGAA GTGAAGGCGA TCTATCGCAG CCAATACTGG GACAAGGTGG GTGGCGATGA GCTTCCCGGG GGCTTGGACT ACTGCGTCTT TGACTTCGCG GTAAACAGCG GTGTTTCGCG CGCTGTGAAG TTCATGCAGC GCCAGCTGGG CGTCAAGGCT GATGGGATTG TCGGGGTGAA CACCATGGAA GCCGTAGACC GCGCGGACGT CGAAGGGTTG ATCCAGTCTA TCTGTCAGGC TCGGTTCTCC TGGCTGAAGA AGCTGCGCCA CTGGGGCACG TTTGGCCGCG GCTGGACACG CCGGGTGATG GGGGAAAGCC TCGGCGTTCA GGCGCGCGAC ACCGGCGTGA TCGATCGCGC TGTCTACCTC CATCGTGAAC TTGCCGTCAT TCACGCGCCG TCCTATCGCG AGGATGGTTC GGGGGCCCGC GCCGAAGACG GTGAACGGAG CCTGTCTGCC ACGGTCAAGG AGTTGATCAC GTCTGGTAAG GGGTGGACCA ATGGCGGCGC TTTGGGCGGC GGCGCAATCG CCCTCACACA GCTTCAAGGC CCTGTTGCCT ACGCCTTGGC CGCTGTGCTT CTGATTGCTG CTGTGACCGC CGCTCTGTAC TTCCTGCGCT CGCAGGAGGC TGCGGCATGA
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Protein sequence | MQKNFDRSLD WVLAHEGGYV NHPKDPGGAT NMGVTQRTYD ADLRRRQLSS RSVKLITMEE VKAIYRSQYW DKVGGDELPG GLDYCVFDFA VNSGVSRAVK FMQRQLGVKA DGIVGVNTME AVDRADVEGL IQSICQARFS WLKKLRHWGT FGRGWTRRVM GESLGVQARD TGVIDRAVYL HRELAVIHAP SYREDGSGAR AEDGERSLSA TVKELITSGK GWTNGGALGG GAIALTQLQG PVAYALAAVL LIAAVTAALY FLRSQEAAA
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