Gene TM1040_1542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1542 
Symbol 
ID4075840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1649633 
End bp1649902 
Gene Length270 bp 
Protein Length89 aa 
Translation table11 
GC content54% 
IMG OID638006855 
Productputative monovalent cation/H+ antiporter subunit F 
Protein accessionYP_613537 
Protein GI99081383 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2212] Multisubunit Na+/H+ antiporter, MnhF subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0184419 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAAT ATGCCTATAT CTTCGCCTTC GGCTGTTTCG CCCTGGCGAT GCTGATGAAC 
CTCTGGAAAG TCGTGACAGG CACAGAGGTG ACCGACCGGA TCCTCGCGCT TGATACCATG
TTCATCAACT CCATCGCCCT TGTGGTTCTC TTTGGGGTGT TCCTCAGTTC CGAGATCTTC
TTTGAGGCCT CGCTGATCAT GGCGATGCTC GGGTTCATCT CTACCGTGGC CTATGCGCGC
TTCTTGCTGC GCGGCAACAT CATCGAGTGA
 
Protein sequence
MIEYAYIFAF GCFALAMLMN LWKVVTGTEV TDRILALDTM FINSIALVVL FGVFLSSEIF 
FEASLIMAML GFISTVAYAR FLLRGNIIE