| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1428 |
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| Symbol | |
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| ID | 4078058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1525837 |
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| End bp | 1526790 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006738 |
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| Product | phage integrase |
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| Protein accession | YP_613423 |
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| Protein GI | 99081269 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.473602 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0585003 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGCAC CCGCGGACGA TCTGCAATGG ATTTCGACCT TTCTCGATGC GCAGGCCGCA
GAACTCGGTG CAGCGCGCAA CACGCTGCTG GCTTACGGGC GGGACCTTCG GAATGTCACC
ACCTGGATGC GCACCAAAGG GCAGAGCTTT GCGCAGATGC AACAGGCTGA CATCGAGGCC
TATCTGATCT CATGCGATGC CGAGGGGCTG AGCCGCGCCA CGCGTGCACG CCGCTTGTCC
GCGATCAAGC AGATTTACCG TTTTGCTTTT GAAGAAGGAT GGCGGCAGGA CAACCCTGCC
TTGCAGATCA AAGGACCGGG GCGCGACAAA TCACTGCCCA AGACCCTTGA TGAGGCAGAA
GTTGATCGCC TCCTTGCTGC CGCGCGCGAA GTCGGGCGAA CCGAGGCCGA CAGGTTGCGC
AACACCTGCC TGATGGAGCT TTTGTACGCG ACGGGCATGC GGGTGAGCGA GCTGGTCTCG
TTGCCGGTGT CCGCCACCCG AGGTGATCCC AACATGCTGT TGATCCTCGG CAAAGGTGGA
AAAGAACGTA TGGTCCCACT GTCGCCACCC GCCCGCGCGG CGCTGGGGGC GTGGATCGTG
CTGCGCGACA GTCTTGAGGA CAAGCGCGAA GGGCAGGGGC ACAAGGCATC GCGCTTTCTC
TTTCCCTCGC GCAGTAAAGA GGGCCATCTT ACGCGGCACC GGTTTTATCT CCTGATCAAA
GAACTGGCGG TCGCAGGCGG CGTCTCGCCC GAAAAGGTCA CACCGCATAC TCTGCGTCAT
GCCTTTGCCA CGCATCTGTT GCAAAACGGT GCAGACCTCA GGGCGATTCA GGCGCTCTTG
GGGCATGCGG ATATTGCGAC AACCGAGATC TACACCCATG TGCTGGATGC GCGGCTGGCG
GAGTTGGTAC ACCAGCATCA CCCGCTTGCG GCAAAAGACG ACGAAACTCG TTGA
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| Protein sequence | MLAPADDLQW ISTFLDAQAA ELGAARNTLL AYGRDLRNVT TWMRTKGQSF AQMQQADIEA
YLISCDAEGL SRATRARRLS AIKQIYRFAF EEGWRQDNPA LQIKGPGRDK SLPKTLDEAE
VDRLLAAARE VGRTEADRLR NTCLMELLYA TGMRVSELVS LPVSATRGDP NMLLILGKGG
KERMVPLSPP ARAALGAWIV LRDSLEDKRE GQGHKASRFL FPSRSKEGHL TRHRFYLLIK
ELAVAGGVSP EKVTPHTLRH AFATHLLQNG ADLRAIQALL GHADIATTEI YTHVLDARLA
ELVHQHHPLA AKDDETR
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