| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1270 |
|---|
| Symbol | |
|---|
| ID | 4077664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1368432 |
|---|
| End bp | 1369436 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638006578 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_613265 |
|---|
| Protein GI | 99081111 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.314543 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACCA AGCCAGAGGC GATTCCCGAG CTCACGTCGG GCGGTAAACA TCGTCGGTTT
ACGTTTGTCC TGTTGGATCA ATTCACCCTC CTGTGCTTCT CCGCCGCGAT GGAATCGCTG
CGGATCGCCA ATCGCATGGC AGGTCGCGAC CTCTATTCCT GGACCCTTGT TGGCGAAGGT
GGCGAGACTG TTACCTGCTC TGCCGGGACC GTGTTTCAGG TGGATTCTGA CCTCACAGAG
TTACAACGTG ATGACACCAT TATGCTCTGC GGTGGGATTG AGGTGCAAAA AGCCACCACC
AAGCGGGTGC TCTCTTGGCT GCGTCGCGAG GCGCGCAAGG GTCTGACCAT CGCGGGCTTG
TGTACGGCCT CTTATACCCT GGCCAAGGCG GGTTTGCTGG ATGGCAAGCG CGCGACCATT
CACTGGGAAA ATTCCGACAG TTTTGCCGAA GAGTTCGAAG ATGTGGATCT GACCAAATCG
GTCTTTGTGA TCGATGGCAA TCGTCTGTCG ACCGCGGGGG GCACCTCGTC GATCGACCTC
ATGCTCAAGA TCATTGCCGA CGACCATGGC GAGGAGCTTG CCAATATGGT GGCGGATCAG
CTGATCTATT CGTCGATCCG CACCGATCAG GACACCCAGC GCCTGTCGAT TCCGACCCGC
ATCGGCGTGC GCCATCCCAA ACTCTCGATG GTGATCCAGA TGATGGAGAA GAACATCGAA
GAGCCGATCA GCCCGTCGAT CCTCGCAGAA GACGTGGGCA TGTCGACGCG TCAGCTTGAG
CGGTTGTTCC GCCGATACCT CAACCGCAGC CCCAAGCGGT ACTACATGGA GCTGCGCCTG
CAAAAGGCTC GCAACCTCCT GATGCAGACA GATATGAGCG TCATCAATGT GGCGCTGGCC
TGTGGCTTTG CATCGCCGTC GCATTTCTCC AAATGCTACC GCGCTCATTA CGACACCACG
CCCTATCGAG AGCGTGGCAG CAAGGGCGTA CGCCACATCA CCTGA
|
|---|
| Protein sequence | MQTKPEAIPE LTSGGKHRRF TFVLLDQFTL LCFSAAMESL RIANRMAGRD LYSWTLVGEG
GETVTCSAGT VFQVDSDLTE LQRDDTIMLC GGIEVQKATT KRVLSWLRRE ARKGLTIAGL
CTASYTLAKA GLLDGKRATI HWENSDSFAE EFEDVDLTKS VFVIDGNRLS TAGGTSSIDL
MLKIIADDHG EELANMVADQ LIYSSIRTDQ DTQRLSIPTR IGVRHPKLSM VIQMMEKNIE
EPISPSILAE DVGMSTRQLE RLFRRYLNRS PKRYYMELRL QKARNLLMQT DMSVINVALA
CGFASPSHFS KCYRAHYDTT PYRERGSKGV RHIT
|
|---|
| |