| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1175 |
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| Symbol | |
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| ID | 4077784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1264744 |
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| End bp | 1265736 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006481 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_613170 |
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| Protein GI | 99081016 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.155667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.336664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGATCA TCAACAGGGC CATAACGGGG CTCGCGGCGA CCATATTGAT GTGCGCCACC
TTGAGCAGCC CTCAGGCGCA GGCCGAAGAT TTCATCACAA TAGGCACGGG GTCGGTGTCG
GGTCTCTATT ACCCGGTGGG CAATGCGATC TGCCGCCTTC TGAACAAGGA CCGTCACCGG
CACGGGATCC GCTGCACCGC CGAGACCAGC GAGGGGTCAC TGGGCAATCT GCGCGATTTG
CGCGAAGGGC GGATCGACTT TGCGCTGGTT CAGTCCGACT GGCAGGCCAA GGCCTTTGAA
GGCACGGCGG CACTGTCACA GGGGGAGCCG TTTTCGGACA TGCGCGCGGT GCTGTCCCTG
CACGAAGAGA TCTTTACCGT TGTTGCCCGT GCGGATTCCG AGATTGCGAC CTTTTCCGAT
CTGCGCGGCA TGCGGGTGAA CATCGGCAAT GAGGGCTCGG GGCAGCGCGC CACGATGCTC
GCGTTGATGG GGGCTCTGGG CTGGAGCATG GAGAGTTTCT CCGAGGTGCA TCATCTGTCT
GCCTCCGAGC AATCCGCAGC GCTTTGTGCG GGGACATTTG ATGCGATGGT CTTTGCTGTT
GGCCACCCCG CTGCCACCGT CGAAGAGGCG ACGACTGCGT GCGACTCGGT TCTGGTGTCG
CTTGATGAAC CTTCAATCCG CGCCGTGATC GCGGATACCG GGTATTTCGA GTTCACCGAG
ATTCCGGCCA ACCTCTATCG CGGCAACCCG CATCCGGTGC AATCCTTTGG CTTTACGGCG
ACTTTGGTGA CAACACGGCA CCAGCGGCTC AAGGTGGTGC ATGAACTGGT GCGCGCGGTG
TTCTCTGATC TCGACGTTTT GCGCGGCGCG CACCCGGCTT TTTCGCGTCT GGAGGCCGGA
CCTATGGTTC AAAACGGGCA GACGGCCCCG ATCCATCGCG CGGCGCGTGC CTATTATCGT
GCGTCGGATC TGCTGGAGCG CGACGGTCAG TAG
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| Protein sequence | MAIINRAITG LAATILMCAT LSSPQAQAED FITIGTGSVS GLYYPVGNAI CRLLNKDRHR
HGIRCTAETS EGSLGNLRDL REGRIDFALV QSDWQAKAFE GTAALSQGEP FSDMRAVLSL
HEEIFTVVAR ADSEIATFSD LRGMRVNIGN EGSGQRATML ALMGALGWSM ESFSEVHHLS
ASEQSAALCA GTFDAMVFAV GHPAATVEEA TTACDSVLVS LDEPSIRAVI ADTGYFEFTE
IPANLYRGNP HPVQSFGFTA TLVTTRHQRL KVVHELVRAV FSDLDVLRGA HPAFSRLEAG
PMVQNGQTAP IHRAARAYYR ASDLLERDGQ
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