| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1030 |
|---|
| Symbol | |
|---|
| ID | 4078542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1108141 |
|---|
| End bp | 1110486 |
|---|
| Gene Length | 2346 bp |
|---|
| Protein Length | 781 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638006334 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_613025 |
|---|
| Protein GI | 99080871 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.372079 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0935457 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTTCT TGGGTCTGTT GACCTTTGCG TGTGCCTTGG CTCTCTTGAT GGGCGCCTCT
CTGGCGCAAT CTCAGGAGAC CGTGCGGGTC CCATGGACCG AAGCTCCGCC GATGATGATG
TCCGATGCAG AGGGTCAGCC AAGCGGATTT ACAGTGGAGC TGGCGCAGAT GCTCGCCCAA
GAGGCGGGCT TTGACATTGA GTTTCGCCAC TATGACCGTA TCGATGAGGT CACAGCCGCG
CAGGCGCGTG GCGAGACGGA TATGCTCGCC GGTGTTGATT TGATTGACGT TTTTCAGCCC
CAGAACCGGA TTTCCGATCC CATCGCGCGG ATCACGGTCT CCCTTGCGGT GCCAACGGAA
CGGGCCGAGC AGTTTGATCC AACCAATCTG GACGGCAAGC GCGTCGCGGT GATCCCACCG
ATCCTAGGCT CTGATCCGGA CTTGTTGCCG GGGGCCACGC TGGTGAATCA TACTAATCCC
GAGGCGGCGT TGGTTTCGGT ATTGTCGGGG CAGGCGGATG CAATGTCCTA CTCCACCAAT
GTGACCTTTG CCATGTTGCG TGCTGCGCGT CTGGATGGTC GGATTGCCTT TTTGGACCCG
CCGCTTTTGG AAACAACACG TGGCGTGGTG GTGCACCAGA GCCGGCCGGA GCTTCTGGAG
CGGATCAATG CGGTGCTGCC CCAACTTGAG GCCAAGGGCA GCCTGCAGGC GCTGCGCGAG
AAATACCTGC TGGCTATTCC GGCGCCTGTG CCGGACACGC TGACCGTGGG GGTACATCAT
GTGCCGCCTT TTGTGTCGAT CTCTGAGGAT GGCACGCCGG GCGGGTTCGG GGTCGAAATT
CTTGAGAGCC TCGCGGAACG GGCCGGGCTC AAACTGCGCT ATCAGCGTAT TACCGACGCC
GAATTTGGCC GCGGCCCGCG ACAGGGTGGG GTGGATGTTA TGCCGATGAT GGCCTCGAAC
CCGACCCGTC GCGCGCGAAT GGATTTTACC TTTCCCGTGC ATCGGGTGCC GTTTTCAATC
TTCACCCTGC ATGAGGCGGC GATTGCGCCG CAGGGTCTGG ATGATCTGAT CGGGCTCAGG
GTCGGGGTCG AGGATGGCAA GAACGCCGCC CAGTTGGCGG AGGTGCATGG CGGTCTGACG
CTTTCGTATC ACGAGGGCAA GGACGGCATC ATGAACGCGC TGCTGCAAGG GCAGGTGGAT
GCCGTGTTGG CGCCCAACTC TGCCTTCACA TCGCATCTTG AGCGAAACCA CCTGCGCGAC
AAGGTCCTCA TCAGCCGGGA GCCCTTTTAT ACATCCGAGT CCGGGCCTGC ATTGCGATTG
GGGCTGGGGG AGGTCCGGGA GGCGCTGAAC GCGGTGATCC CGGCCTATCT GATCTCGGAG
GATTATGAGC GGCTGCAGCA GGAGTGGTTT GGCACTCCCA CCTTCTGGAC GTCTGCCCGG
CTGCGCATGC TGCTGGCGCT TGGGCTTGCG TTCCTTCTGT TCGCGCTTGG CTTTGGCATC
TGGCAAAAGA TGCAGCGCTC GCGCGCGCAG GAACGTCAGG CCCGCCTGTT GCAGCAATCG
CGCCAGCTTG AGGTCCTGGT GGACGAACTC GAGCGCTCGA ACCGGGAACT CGACAGTTTT
GCCGATATTG CCTCTCACGA TCTCAAGGAA CCGCTGCGCG GCATCCAGTG GCAGGTTCAG
GCGCTGCAGG AGCGCGCGGC AGAGGCGCTG CCGGAGGAAA TCTGCCGTAT CGAGCAGCTC
TGCGCACAGA TGGAGACCAC GATTTCGGAT CTGTTGGCCT CTGCTCAGCA TCGCGGCAAG
GGCAGTGACA TCGCCGACAT CGAAACCGGT GACGTGGTCG ATGAGATCCG CACCGAGCTT
GCAGAGCTTC TGACAGAGAC CAAGGGGGAG CTCCGCGTGG AGACGCCCTT GCCGCGCGTG
CATGCCAGCC GAGCCAAAGC CAAGGTCGTG TTTCAGAACC TTATCGCCAA TGGTCTGATC
TACAATCGGT CCGACACTCC GGTTGTGCGC GTCGGCTATC TGAGCGAGGA CACCCCCGAC
GACAGCGGGC TCTTGCATGT GTTTTATGTG CGCGACAACG GCATCGGCAT CGCGACCGAG
GATCAGGGGC AGATTTTCCA GCCGGGCGTG CGGGGCAAAC ACTCTGGCAT GCGACGCTTG
CCCGGCACCG GGGGAAATGG TCTAGGCCTT TCCTTTGCCA AAGAAATCGT GGAAAGTTAC
GGCCAGTTGA TCGCATTTGA AACCACCCCC GGAGAGGGGA CTACCTTTTA CTTTTCGCTG
CCCAATGCGA AAGGTGAAGA GGCGATTTCT GTGACGGGCG AGGCGAGATT GGCGGACGCA
AAATGA
|
|---|
| Protein sequence | MLFLGLLTFA CALALLMGAS LAQSQETVRV PWTEAPPMMM SDAEGQPSGF TVELAQMLAQ
EAGFDIEFRH YDRIDEVTAA QARGETDMLA GVDLIDVFQP QNRISDPIAR ITVSLAVPTE
RAEQFDPTNL DGKRVAVIPP ILGSDPDLLP GATLVNHTNP EAALVSVLSG QADAMSYSTN
VTFAMLRAAR LDGRIAFLDP PLLETTRGVV VHQSRPELLE RINAVLPQLE AKGSLQALRE
KYLLAIPAPV PDTLTVGVHH VPPFVSISED GTPGGFGVEI LESLAERAGL KLRYQRITDA
EFGRGPRQGG VDVMPMMASN PTRRARMDFT FPVHRVPFSI FTLHEAAIAP QGLDDLIGLR
VGVEDGKNAA QLAEVHGGLT LSYHEGKDGI MNALLQGQVD AVLAPNSAFT SHLERNHLRD
KVLISREPFY TSESGPALRL GLGEVREALN AVIPAYLISE DYERLQQEWF GTPTFWTSAR
LRMLLALGLA FLLFALGFGI WQKMQRSRAQ ERQARLLQQS RQLEVLVDEL ERSNRELDSF
ADIASHDLKE PLRGIQWQVQ ALQERAAEAL PEEICRIEQL CAQMETTISD LLASAQHRGK
GSDIADIETG DVVDEIRTEL AELLTETKGE LRVETPLPRV HASRAKAKVV FQNLIANGLI
YNRSDTPVVR VGYLSEDTPD DSGLLHVFYV RDNGIGIATE DQGQIFQPGV RGKHSGMRRL
PGTGGNGLGL SFAKEIVESY GQLIAFETTP GEGTTFYFSL PNAKGEEAIS VTGEARLADA
K
|
|---|
| |