| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0949 |
|---|
| Symbol | |
|---|
| ID | 4077343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1013114 |
|---|
| End bp | 1014253 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638006252 |
|---|
| Product | permease YjgP/YjgQ |
|---|
| Protein accession | YP_612944 |
|---|
| Protein GI | 99080790 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0162429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCACGCT ACGACAGATA TGTGCTGTCG CAATATCTTT TGTTCTTTGG CTTTTTTGCC
TTGATTCTGG TGGCCGTGTT CTGGATCAAC CGGGCCGTAA GCCTGTTTGA CTGGCTCATT
GGCGATGGCC AAAGCGTTCT CGCGTTCCTC GAGATCTCTG CGCTGAGCCT GCCGAACCTT
GTGCGCATGG TGCTCCCGCT GGCCGCGTTT GCGGCGACGG TCTGGGTCAC CAACCGGCTG
AACTCTGAGA GCGAATTGAC GGTATTGCGC GCAACCGGCT CAAGCCCGTG GCAACTGGCC
CGACCGGCCA TGGTCTTTGG GCTGTTGAGC GCTGCGATGA TGTCAGCCCT GAGCCTGTTT
CTCTTGCCGG CCTCGCTTGC GCAAATGCAG TTTCGCGAGG CGGAACTCTC GCGCAGCGTC
AGCGCCAAGC TGTTGAATGC CGGGAGTTTC CTCCACCCAA GCGAGGGCAT CACGTTTTTC
ATCGGCTCGA TTGAGCCGGA TGGAACGTTG CAGAATGTAT TCCTTACAGA TCAGCGCGAC
CCCTCTGTGG AAATCACATA CACCAGTGAT CGCGCCTATC TGGTGCGTGA AGACGACGAA
GCCCACCTGA TCCTCGTGGA CGGGCTCGCG CAGCGCAAAG AGGCCCATAA CGATCGTCTT
TCGACCACGG CGTTCTCGGA TTTTTCATAC CCGCTTGGGG ATCTTTCGCC CGCACGCGCT
GCAGGCGCGC GCCCGCTGCG CAATATTCCC ACGCTTGATC TGCTGCGCGA ACGCGCAAGC
ATCACCGAAG AGGAAGGCCA TAGCGCCGGG GCTCAGGCCG AAGAGTTGCA CCTGCGTTTT
GCGCGGGCGG CGGTGACCTT TGCGGTGGTG ATGATCGGGG TCTCGACCCT GTTGATGGGG
GGCTTCAGTC GCTTTGGGAT CTGGAAACAG GTGCTTGGGG CCTTTGTGCT ATTGATCCTG
ATCGAAGGCA TGCGGGGGGT CGTCGCCGAC CCGGTACGGG AAAATGCGGC GATGTGGCCG
CTCATCTACC TGCCTGCGAC GTTGGGCGTG ATGATTTCGG TTCTGTTTCT GCATCTGGCG
ACGCGGCCGC AGGCCCTGAT GCGGCTCACG AGGCGCAAGA CGCAGGAGAC AGACGCATGA
|
|---|
| Protein sequence | MSRYDRYVLS QYLLFFGFFA LILVAVFWIN RAVSLFDWLI GDGQSVLAFL EISALSLPNL
VRMVLPLAAF AATVWVTNRL NSESELTVLR ATGSSPWQLA RPAMVFGLLS AAMMSALSLF
LLPASLAQMQ FREAELSRSV SAKLLNAGSF LHPSEGITFF IGSIEPDGTL QNVFLTDQRD
PSVEITYTSD RAYLVREDDE AHLILVDGLA QRKEAHNDRL STTAFSDFSY PLGDLSPARA
AGARPLRNIP TLDLLRERAS ITEEEGHSAG AQAEELHLRF ARAAVTFAVV MIGVSTLLMG
GFSRFGIWKQ VLGAFVLLIL IEGMRGVVAD PVRENAAMWP LIYLPATLGV MISVLFLHLA
TRPQALMRLT RRKTQETDA
|
|---|
| |