| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0642 |
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| Symbol | |
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| ID | 4076129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 686000 |
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| End bp | 687877 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005939 |
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| Product | cobalt chelatase, CobT subunit |
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| Protein accession | YP_612637 |
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| Protein GI | 99080483 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4547] Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) |
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| TIGRFAM ID | [TIGR01651] cobaltochelatase, CobT subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0589223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0701901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAC CAAATGACAA CCCGGCAGAT CCGTTCAAGA AGGCCCTCGC AGAGGCCACC
AAGGTCATGG CCGATGACAC GGAACTGACG GTCAACTATT CGGTCGACCC CGCTGGAATG
AGCGGCGACA CGATGCGCTT GCCGCAGGTT TCCCGCCGCA TGACACGAGA GGAAGTGCTG
CTGGCGCGCG GGACCGCCGA TGCGCTGGCG CTGCGCCGCA GGTATCACGA CGAGAGCGTT
GCCAGCCGTT ATGCGCCCTC CGGCGACATG GCGCGCGAAT TGTATGATGC AATGGAAAGC
GCCCGTTGCG AGGCGATGGG CGCGCGCGAT ATGCCGGGCA CAGCCTCCAA CATTGACGTC
AAGATCCAGA ACGAAGCGCT GCGGCGCGGG TATGATCAGG TCACATCTGC ATCAGAGGCG
CCCCTGGCGG TGTCCGCAGG TTATCTGATC CGTCATCTCG CCACCGGCCG CCCGATGCCC
GAGGCAGCGG CAAACGTCAT GGAACTCTGG CGTGGCTTTA TCGAAGCGCA AGCTGGCGAG
ACGCTCGAGA ACCTAGATGA AACCCTCTCG GATCAGGCCG CATTTGCAAA ATTTGCCCGC
CGGGTGATTT CTGACCTTGG CTATGGCGAC CAGCTTGGCG ACGACCCGGA TGATCTCGAT
GACGAGATGA ATGACGAGTC CGAGGAGACC GCCGAAGAAG AGGAACAGCC CGACAGCTCT
GGCCAGGACG ACAGCGACGA GGAAGAGGCG GACGCCTCTC CCGAGCAGGC ACAGGAACAG
CAGCAGGACG AGAGTCAGGC TCAGGTTTCC GCCGACGACA TGGCCGAAGA AGAGGTCACC
GACGAGACCG AGATGCCCGA CGGCGAGGCC CCGCTGGAGC CTCCGGCCCC GCAACCCGTC
TCTGACGCTG ATCCCGATTA CCGCGTGTTC CTCGACGCCC ATGACGAGGA AATCGCCGCC
GAAGATCTCG CTGAGCCACA GGAGCTCGAG CGCCTGCGCG CCTATCTCGA TCAGCAGCTG
GAGCCTCTGA AGGGCGCGGT ATCGCGGCTT GCCAACAAAC TGCAGCGTCG CCTGCAGGCG
CAGCAGAACC GCTCTTGGGA ATTCGACAAG GAAGAAGGCG TGCTGGATGC TGGCCGCCTG
GCGCGTGTGG TCGCGAACCC CACCACGCCC CTGTCGTTCA AGGTCGAAAA GGACATGGAG
TTCCGCGACA CTGTGGTGAC GCTCCTGTTG GACAATTCCG GCTCCATGCG CGGGCGGCCT
ATTTCCATCG CGGCGATCTG TGCCGATGTT CTGGCGCGCA CGCTGGAGCG GTGCAACGTG
AAGGTTGAAA TCCTCGGCTT CACCACCCGC GCCTGGAAAG GCGGGCTCTC GCGCGAGGCC
TGGCTCAACG AGGGCCGTCC GCAGTTGCCG GGGCGTCTCA ATGATCTGCG CCACATCATC
TACAAGGGGG CCGATGCGCC CTGGCGGCGC GTGCGCCCGA ACCTTGGCTT GATGATGAAA
GAGGGCCTCC TGAAAGAAAA CATCGATGGT GAAGCACTCG AATGGGCGCA TCGTCGCATG
GTGAACCGGC CCGAGGCGCG CAAGATCCTG ATGGTGATTT CAGACGGTGC CCCCGTTGAC
GATTCCACCC TCTCGGTGAA CCCGGCGAAT TACCTTGAAA AACACCTGCG TGACGTAATC
GCCATGGTGG AGAAAAAGAA ACAGGTGGAG CTTCTCGCCA TTGGCATTGG CCATGATGTG
ACCCGCTATT ACGACCGCGC GGTGACGATC ACCGACGTCG AACAGCTTGC GGGCGCGATG
ACGGAACAGC TTGCGGCCCT CTTTGACAGT GATCCAAGGG CGCGTGCGCG GGTAATGGGG
ATGCGTCGCA CCGGATAG
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| Protein sequence | MSKPNDNPAD PFKKALAEAT KVMADDTELT VNYSVDPAGM SGDTMRLPQV SRRMTREEVL
LARGTADALA LRRRYHDESV ASRYAPSGDM ARELYDAMES ARCEAMGARD MPGTASNIDV
KIQNEALRRG YDQVTSASEA PLAVSAGYLI RHLATGRPMP EAAANVMELW RGFIEAQAGE
TLENLDETLS DQAAFAKFAR RVISDLGYGD QLGDDPDDLD DEMNDESEET AEEEEQPDSS
GQDDSDEEEA DASPEQAQEQ QQDESQAQVS ADDMAEEEVT DETEMPDGEA PLEPPAPQPV
SDADPDYRVF LDAHDEEIAA EDLAEPQELE RLRAYLDQQL EPLKGAVSRL ANKLQRRLQA
QQNRSWEFDK EEGVLDAGRL ARVVANPTTP LSFKVEKDME FRDTVVTLLL DNSGSMRGRP
ISIAAICADV LARTLERCNV KVEILGFTTR AWKGGLSREA WLNEGRPQLP GRLNDLRHII
YKGADAPWRR VRPNLGLMMK EGLLKENIDG EALEWAHRRM VNRPEARKIL MVISDGAPVD
DSTLSVNPAN YLEKHLRDVI AMVEKKKQVE LLAIGIGHDV TRYYDRAVTI TDVEQLAGAM
TEQLAALFDS DPRARARVMG MRRTG
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