| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0634 |
|---|
| Symbol | |
|---|
| ID | 4076121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 676977 |
|---|
| End bp | 677582 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638005931 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612629 |
|---|
| Protein GI | 99080475 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.253327 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCGAGA CCTTCGGCTT TGCGCCGGGG CAGGGTGTTG CGCGGCTTGA TCTGCACTTG
GCGCGTCTGA CGCGCTCTGC CGAGGCCTTT GGTATTCCGT TCCGGCGTGC CAAAGCGCTG
GCCATGGTTG AGGATCTCGC GGCGACCACG CCGCTGCGCT GCCGTATGAC GCTGGCTGCG
GATGGTTTTC TTGCGTTGAC CACCGCAGAG ATGCCGGCAG CGGCAAACCT CTGGCGCGTT
GGGATTGCGC AGGAGCGCCT CGCCTCGGAT GAGCCTTTGC TGCGTCACAA GACGACCCGC
CGAGAGATCT ACGATCGCGC GCGGGCGCGC CTGCCCGCAG GGATCGACGA GGTGATATTT
TTCAACGAAC GCGACGAGAT CTGCGAGGGC ACAATCACCA ATCTTGTTCT GACAAGAGAG
GACGGTACGC GGCTGACGCC ACCTGTGTCC TCGGGCTGCT TACCGGGCGT CTACCGCCAG
AGCCTGCTCG ACGCAGGAAG CTTAAAAGAA GCCGTTTTGA CAATGGCCGA CCTTCAACGG
GCCGCTGCAC TGCATCTCAC GAATGCGCTG CGCGGTGAGA TCCCCGCGAC ACTGTTCGAG
ATCTGA
|
|---|
| Protein sequence | MIETFGFAPG QGVARLDLHL ARLTRSAEAF GIPFRRAKAL AMVEDLAATT PLRCRMTLAA
DGFLALTTAE MPAAANLWRV GIAQERLASD EPLLRHKTTR REIYDRARAR LPAGIDEVIF
FNERDEICEG TITNLVLTRE DGTRLTPPVS SGCLPGVYRQ SLLDAGSLKE AVLTMADLQR
AAALHLTNAL RGEIPATLFE I
|
|---|
| |